Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09875

Experiment: Inosine 0.3728 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09870 and A4249_RS09875 are separated by 186 nucleotidesA4249_RS09875 and A4249_RS09880 are separated by 231 nucleotides A4249_RS09870: A4249_RS09870 - UDP-3-O-acyl-N-acetylglucosamine deacetylase, at 1,965,317 to 1,966,216 _RS09870 A4249_RS09875: A4249_RS09875 - cell division protein FtsZ, at 1,966,403 to 1,967,989 _RS09875 A4249_RS09880: A4249_RS09880 - TonB-dependent receptor, at 1,968,221 to 1,971,487 _RS09880 Position (kb) 1966 1967 1968Strain fitness (log2 ratio) -2 -1 0 1 2at 1966.280 kb on - strandat 1966.280 kb on - strandat 1966.280 kb on - strandat 1966.280 kb on - strandat 1966.404 kb on + strandat 1966.404 kb on + strandat 1966.404 kb on + strandat 1966.404 kb on + strandat 1966.405 kb on - strandat 1966.405 kb on - strandat 1966.405 kb on - strandat 1966.405 kb on - strandat 1966.405 kb on - strandat 1966.405 kb on - strandat 1966.405 kb on - strandat 1966.405 kb on - strandat 1966.405 kb on - strandat 1966.405 kb on - strandat 1966.405 kb on - strandat 1966.405 kb on - strandat 1966.405 kb on - strandat 1966.405 kb on - strandat 1968.222 kb on + strandat 1968.223 kb on - strandat 1968.234 kb on + strandat 1968.234 kb on + strandat 1968.234 kb on + strandat 1968.234 kb on + strandat 1968.235 kb on - strandat 1968.235 kb on - strandat 1968.253 kb on - strandat 1968.264 kb on + strandat 1968.282 kb on + strandat 1968.283 kb on - strandat 1968.283 kb on - strandat 1968.290 kb on - strandat 1968.290 kb on - strandat 1968.415 kb on - strandat 1968.562 kb on - strand, within A4249_RS09880at 1968.705 kb on + strand, within A4249_RS09880at 1968.705 kb on + strand, within A4249_RS09880at 1968.736 kb on + strand, within A4249_RS09880at 1968.736 kb on + strand, within A4249_RS09880at 1968.737 kb on - strand, within A4249_RS09880at 1968.747 kb on + strand, within A4249_RS09880at 1968.747 kb on + strand, within A4249_RS09880at 1968.747 kb on + strand, within A4249_RS09880at 1968.747 kb on + strand, within A4249_RS09880at 1968.748 kb on - strand, within A4249_RS09880at 1968.748 kb on - strand, within A4249_RS09880at 1968.748 kb on - strand, within A4249_RS09880at 1968.823 kb on + strand, within A4249_RS09880at 1968.824 kb on - strand, within A4249_RS09880at 1968.933 kb on + strand, within A4249_RS09880at 1968.933 kb on + strand, within A4249_RS09880at 1968.934 kb on - strand, within A4249_RS09880at 1968.936 kb on + strand, within A4249_RS09880at 1968.936 kb on + strand, within A4249_RS09880at 1968.936 kb on + strand, within A4249_RS09880at 1968.936 kb on + strand, within A4249_RS09880at 1968.937 kb on - strand, within A4249_RS09880at 1968.937 kb on - strand, within A4249_RS09880

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine 0.3728 mM (C)
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1,966,280 - +1.5
1,966,280 - -0.4
1,966,280 - -0.2
1,966,280 - -0.3
1,966,404 + -0.1
1,966,404 + +1.3
1,966,404 + -0.7
1,966,404 + -0.4
1,966,405 - +0.6
1,966,405 - -0.5
1,966,405 - +0.4
1,966,405 - -0.6
1,966,405 - -0.3
1,966,405 - -0.4
1,966,405 - -0.2
1,966,405 - +0.5
1,966,405 - -0.6
1,966,405 - +0.4
1,966,405 - -0.3
1,966,405 - -0.6
1,966,405 - -0.3
1,966,405 - +1.2
1,968,222 + -1.0
1,968,223 - -0.6
1,968,234 + +1.1
1,968,234 + -1.0
1,968,234 + +0.7
1,968,234 + +0.5
1,968,235 - +0.4
1,968,235 - +0.4
1,968,253 - -0.4
1,968,264 + -1.7
1,968,282 + +0.1
1,968,283 - -0.4
1,968,283 - +0.7
1,968,290 - +0.0
1,968,290 - -0.6
1,968,415 - +0.5
1,968,562 - A4249_RS09880 0.10 +0.5
1,968,705 + A4249_RS09880 0.15 -0.9
1,968,705 + A4249_RS09880 0.15 +0.2
1,968,736 + A4249_RS09880 0.16 -1.7
1,968,736 + A4249_RS09880 0.16 +0.9
1,968,737 - A4249_RS09880 0.16 -2.2
1,968,747 + A4249_RS09880 0.16 -0.5
1,968,747 + A4249_RS09880 0.16 -0.8
1,968,747 + A4249_RS09880 0.16 +0.4
1,968,747 + A4249_RS09880 0.16 +1.9
1,968,748 - A4249_RS09880 0.16 -0.2
1,968,748 - A4249_RS09880 0.16 +1.1
1,968,748 - A4249_RS09880 0.16 +0.9
1,968,823 + A4249_RS09880 0.18 -0.4
1,968,824 - A4249_RS09880 0.18 -0.5
1,968,933 + A4249_RS09880 0.22 +0.4
1,968,933 + A4249_RS09880 0.22 -0.1
1,968,934 - A4249_RS09880 0.22 -0.1
1,968,936 + A4249_RS09880 0.22 -0.8
1,968,936 + A4249_RS09880 0.22 -0.4
1,968,936 + A4249_RS09880 0.22 -1.7
1,968,936 + A4249_RS09880 0.22 +0.4
1,968,937 - A4249_RS09880 0.22 -2.3
1,968,937 - A4249_RS09880 0.22 -0.3

Or see this region's nucleotide sequence