Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09000

Experiment: Inosine 0.3728 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS08995 and A4249_RS09000 are separated by 144 nucleotidesA4249_RS09000 and A4249_RS09005 are separated by 134 nucleotidesA4249_RS09005 and A4249_RS09010 are separated by 86 nucleotides A4249_RS08995: A4249_RS08995 - ATP-binding protein, at 1,801,397 to 1,802,794 _RS08995 A4249_RS09000: A4249_RS09000 - response regulator, at 1,802,939 to 1,805,227 _RS09000 A4249_RS09005: A4249_RS09005 - 50S ribosomal protein L25/general stress protein Ctc, at 1,805,362 to 1,805,994 _RS09005 A4249_RS09010: A4249_RS09010 - aminoacyl-tRNA hydrolase, at 1,806,081 to 1,806,689 _RS09010 Position (kb) 1802 1803 1804 1805 1806Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1802.878 kb on + strandat 1802.878 kb on + strandat 1802.879 kb on - strandat 1802.919 kb on + strandat 1802.919 kb on + strandat 1802.919 kb on + strandat 1802.919 kb on + strandat 1802.919 kb on + strandat 1802.919 kb on + strandat 1802.919 kb on + strandat 1802.920 kb on - strandat 1802.920 kb on - strandat 1802.920 kb on - strandat 1802.920 kb on - strandat 1802.920 kb on - strandat 1802.920 kb on - strandat 1802.920 kb on - strandat 1802.920 kb on - strandat 1802.920 kb on - strandat 1802.986 kb on + strandat 1802.987 kb on - strandat 1802.987 kb on - strandat 1802.987 kb on - strandat 1803.176 kb on + strand, within A4249_RS09000at 1803.176 kb on + strand, within A4249_RS09000at 1803.176 kb on + strand, within A4249_RS09000at 1803.176 kb on + strand, within A4249_RS09000at 1803.177 kb on - strand, within A4249_RS09000at 1803.177 kb on - strand, within A4249_RS09000at 1803.177 kb on - strand, within A4249_RS09000at 1803.177 kb on - strand, within A4249_RS09000at 1803.177 kb on - strand, within A4249_RS09000at 1803.320 kb on + strand, within A4249_RS09000at 1803.320 kb on + strand, within A4249_RS09000at 1803.320 kb on + strand, within A4249_RS09000at 1803.320 kb on + strand, within A4249_RS09000at 1803.320 kb on + strand, within A4249_RS09000at 1803.320 kb on + strand, within A4249_RS09000at 1803.320 kb on + strand, within A4249_RS09000at 1803.320 kb on + strand, within A4249_RS09000at 1803.321 kb on - strand, within A4249_RS09000at 1803.321 kb on - strand, within A4249_RS09000at 1803.321 kb on - strand, within A4249_RS09000at 1803.321 kb on - strand, within A4249_RS09000at 1803.321 kb on - strand, within A4249_RS09000at 1803.321 kb on - strand, within A4249_RS09000at 1803.321 kb on - strand, within A4249_RS09000at 1803.321 kb on - strand, within A4249_RS09000at 1803.329 kb on - strand, within A4249_RS09000at 1803.431 kb on + strand, within A4249_RS09000at 1803.647 kb on + strand, within A4249_RS09000at 1803.647 kb on + strand, within A4249_RS09000at 1803.648 kb on - strand, within A4249_RS09000at 1803.648 kb on - strand, within A4249_RS09000at 1803.648 kb on - strand, within A4249_RS09000at 1803.648 kb on - strand, within A4249_RS09000at 1803.648 kb on - strand, within A4249_RS09000at 1803.648 kb on - strand, within A4249_RS09000at 1803.649 kb on + strand, within A4249_RS09000at 1803.649 kb on + strand, within A4249_RS09000at 1803.650 kb on - strand, within A4249_RS09000at 1803.650 kb on - strand, within A4249_RS09000at 1803.650 kb on - strand, within A4249_RS09000at 1803.650 kb on - strand, within A4249_RS09000at 1803.650 kb on - strand, within A4249_RS09000at 1803.650 kb on - strand, within A4249_RS09000at 1803.650 kb on - strand, within A4249_RS09000at 1803.650 kb on - strand, within A4249_RS09000at 1803.719 kb on + strand, within A4249_RS09000at 1803.719 kb on + strand, within A4249_RS09000at 1803.719 kb on + strand, within A4249_RS09000at 1803.720 kb on - strand, within A4249_RS09000at 1803.720 kb on - strand, within A4249_RS09000at 1803.720 kb on - strand, within A4249_RS09000at 1803.720 kb on - strand, within A4249_RS09000at 1803.758 kb on + strand, within A4249_RS09000at 1803.759 kb on - strand, within A4249_RS09000at 1803.759 kb on - strand, within A4249_RS09000at 1803.759 kb on - strand, within A4249_RS09000at 1803.759 kb on - strand, within A4249_RS09000at 1803.759 kb on - strand, within A4249_RS09000at 1803.848 kb on + strand, within A4249_RS09000at 1803.849 kb on - strand, within A4249_RS09000at 1803.958 kb on + strand, within A4249_RS09000at 1803.959 kb on - strand, within A4249_RS09000at 1803.959 kb on - strand, within A4249_RS09000at 1803.974 kb on - strand, within A4249_RS09000at 1803.974 kb on - strand, within A4249_RS09000at 1803.974 kb on - strand, within A4249_RS09000at 1804.340 kb on + strand, within A4249_RS09000at 1804.341 kb on - strand, within A4249_RS09000at 1804.741 kb on + strand, within A4249_RS09000at 1804.741 kb on + strand, within A4249_RS09000at 1804.742 kb on - strand, within A4249_RS09000at 1805.714 kb on - strand, within A4249_RS09005at 1805.714 kb on - strand, within A4249_RS09005

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine 0.3728 mM (C)
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1,802,878 + -1.6
1,802,878 + +0.5
1,802,879 - +0.2
1,802,919 + -0.2
1,802,919 + -0.4
1,802,919 + -0.5
1,802,919 + +0.1
1,802,919 + +0.3
1,802,919 + -0.2
1,802,919 + -1.2
1,802,920 - +1.0
1,802,920 - -0.7
1,802,920 - +1.0
1,802,920 - +0.2
1,802,920 - +0.9
1,802,920 - -0.8
1,802,920 - +0.4
1,802,920 - -1.0
1,802,920 - -0.1
1,802,986 + +0.4
1,802,987 - +0.3
1,802,987 - +0.8
1,802,987 - +1.7
1,803,176 + A4249_RS09000 0.10 -2.1
1,803,176 + A4249_RS09000 0.10 +0.3
1,803,176 + A4249_RS09000 0.10 +1.3
1,803,176 + A4249_RS09000 0.10 +0.8
1,803,177 - A4249_RS09000 0.10 +0.3
1,803,177 - A4249_RS09000 0.10 -0.3
1,803,177 - A4249_RS09000 0.10 +0.4
1,803,177 - A4249_RS09000 0.10 +0.4
1,803,177 - A4249_RS09000 0.10 -0.2
1,803,320 + A4249_RS09000 0.17 -0.5
1,803,320 + A4249_RS09000 0.17 -0.2
1,803,320 + A4249_RS09000 0.17 +0.6
1,803,320 + A4249_RS09000 0.17 +0.7
1,803,320 + A4249_RS09000 0.17 -1.0
1,803,320 + A4249_RS09000 0.17 -0.1
1,803,320 + A4249_RS09000 0.17 +1.6
1,803,320 + A4249_RS09000 0.17 -0.4
1,803,321 - A4249_RS09000 0.17 -0.6
1,803,321 - A4249_RS09000 0.17 -0.1
1,803,321 - A4249_RS09000 0.17 -0.1
1,803,321 - A4249_RS09000 0.17 -0.3
1,803,321 - A4249_RS09000 0.17 -1.0
1,803,321 - A4249_RS09000 0.17 +1.6
1,803,321 - A4249_RS09000 0.17 -0.6
1,803,321 - A4249_RS09000 0.17 +0.7
1,803,329 - A4249_RS09000 0.17 -1.4
1,803,431 + A4249_RS09000 0.21 -0.2
1,803,647 + A4249_RS09000 0.31 -0.1
1,803,647 + A4249_RS09000 0.31 +1.2
1,803,648 - A4249_RS09000 0.31 -0.6
1,803,648 - A4249_RS09000 0.31 +0.6
1,803,648 - A4249_RS09000 0.31 -2.3
1,803,648 - A4249_RS09000 0.31 +1.1
1,803,648 - A4249_RS09000 0.31 -0.6
1,803,648 - A4249_RS09000 0.31 -0.3
1,803,649 + A4249_RS09000 0.31 -0.1
1,803,649 + A4249_RS09000 0.31 -0.2
1,803,650 - A4249_RS09000 0.31 +2.8
1,803,650 - A4249_RS09000 0.31 +0.3
1,803,650 - A4249_RS09000 0.31 +0.9
1,803,650 - A4249_RS09000 0.31 +0.6
1,803,650 - A4249_RS09000 0.31 -0.5
1,803,650 - A4249_RS09000 0.31 +1.1
1,803,650 - A4249_RS09000 0.31 +0.3
1,803,650 - A4249_RS09000 0.31 +0.1
1,803,719 + A4249_RS09000 0.34 +1.2
1,803,719 + A4249_RS09000 0.34 +1.3
1,803,719 + A4249_RS09000 0.34 +1.4
1,803,720 - A4249_RS09000 0.34 -1.1
1,803,720 - A4249_RS09000 0.34 +0.4
1,803,720 - A4249_RS09000 0.34 -1.1
1,803,720 - A4249_RS09000 0.34 -1.2
1,803,758 + A4249_RS09000 0.36 -0.2
1,803,759 - A4249_RS09000 0.36 +0.2
1,803,759 - A4249_RS09000 0.36 +0.0
1,803,759 - A4249_RS09000 0.36 +0.9
1,803,759 - A4249_RS09000 0.36 -0.3
1,803,759 - A4249_RS09000 0.36 +0.9
1,803,848 + A4249_RS09000 0.40 -1.4
1,803,849 - A4249_RS09000 0.40 -0.6
1,803,958 + A4249_RS09000 0.45 -1.1
1,803,959 - A4249_RS09000 0.45 -0.4
1,803,959 - A4249_RS09000 0.45 +0.3
1,803,974 - A4249_RS09000 0.45 -0.1
1,803,974 - A4249_RS09000 0.45 +1.3
1,803,974 - A4249_RS09000 0.45 +0.2
1,804,340 + A4249_RS09000 0.61 -0.4
1,804,341 - A4249_RS09000 0.61 +0.0
1,804,741 + A4249_RS09000 0.79 -1.0
1,804,741 + A4249_RS09000 0.79 +0.2
1,804,742 - A4249_RS09000 0.79 -2.2
1,805,714 - A4249_RS09005 0.56 +0.7
1,805,714 - A4249_RS09005 0.56 +0.5

Or see this region's nucleotide sequence