Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08865

Experiment: Inosine 0.3728 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS08855 and A4249_RS08860 are separated by 9 nucleotidesA4249_RS08860 and A4249_RS08865 are separated by 109 nucleotidesA4249_RS08865 and A4249_RS08870 are separated by 88 nucleotides A4249_RS08855: A4249_RS08855 - L,D-transpeptidase family protein, at 1,774,047 to 1,775,609 _RS08855 A4249_RS08860: A4249_RS08860 - DUF1465 family protein, at 1,775,619 to 1,776,119 _RS08860 A4249_RS08865: A4249_RS08865 - DUF1192 domain-containing protein, at 1,776,229 to 1,776,432 _RS08865 A4249_RS08870: A4249_RS08870 - NAD(P)H-quinone oxidoreductase, at 1,776,521 to 1,777,492 _RS08870 Position (kb) 1776 1777Strain fitness (log2 ratio) -2 -1 0 1 2at 1775.238 kb on + strand, within A4249_RS08855at 1775.238 kb on + strand, within A4249_RS08855at 1775.239 kb on - strand, within A4249_RS08855at 1775.455 kb on - strandat 1775.508 kb on + strandat 1775.698 kb on + strand, within A4249_RS08860at 1775.698 kb on + strand, within A4249_RS08860at 1775.698 kb on + strand, within A4249_RS08860at 1775.698 kb on + strand, within A4249_RS08860at 1775.698 kb on + strand, within A4249_RS08860at 1775.698 kb on + strand, within A4249_RS08860at 1775.699 kb on - strand, within A4249_RS08860at 1775.699 kb on - strand, within A4249_RS08860at 1775.699 kb on - strand, within A4249_RS08860at 1775.699 kb on - strand, within A4249_RS08860at 1775.699 kb on - strand, within A4249_RS08860at 1775.699 kb on - strand, within A4249_RS08860at 1775.699 kb on - strand, within A4249_RS08860at 1775.699 kb on - strand, within A4249_RS08860at 1775.716 kb on + strand, within A4249_RS08860at 1775.716 kb on + strand, within A4249_RS08860at 1775.716 kb on + strand, within A4249_RS08860at 1775.717 kb on - strand, within A4249_RS08860at 1775.717 kb on - strand, within A4249_RS08860at 1775.717 kb on - strand, within A4249_RS08860at 1775.717 kb on - strand, within A4249_RS08860at 1775.717 kb on - strand, within A4249_RS08860at 1775.717 kb on - strand, within A4249_RS08860at 1775.717 kb on - strand, within A4249_RS08860at 1775.755 kb on + strand, within A4249_RS08860at 1775.755 kb on + strand, within A4249_RS08860at 1775.755 kb on + strand, within A4249_RS08860at 1775.756 kb on - strand, within A4249_RS08860at 1775.756 kb on - strand, within A4249_RS08860at 1775.756 kb on - strand, within A4249_RS08860at 1775.756 kb on - strand, within A4249_RS08860at 1775.941 kb on + strand, within A4249_RS08860at 1775.941 kb on + strand, within A4249_RS08860at 1775.942 kb on - strand, within A4249_RS08860at 1776.001 kb on + strand, within A4249_RS08860at 1776.002 kb on - strand, within A4249_RS08860at 1776.356 kb on + strand, within A4249_RS08865at 1776.357 kb on - strand, within A4249_RS08865at 1776.480 kb on + strandat 1776.481 kb on - strandat 1776.803 kb on + strand, within A4249_RS08870at 1776.863 kb on + strand, within A4249_RS08870at 1776.863 kb on + strand, within A4249_RS08870at 1776.863 kb on + strand, within A4249_RS08870at 1776.863 kb on + strand, within A4249_RS08870at 1776.864 kb on - strand, within A4249_RS08870at 1776.864 kb on - strand, within A4249_RS08870at 1776.864 kb on - strand, within A4249_RS08870at 1776.864 kb on - strand, within A4249_RS08870at 1776.864 kb on - strand, within A4249_RS08870at 1777.284 kb on + strand, within A4249_RS08870at 1777.285 kb on - strand, within A4249_RS08870at 1777.305 kb on + strand, within A4249_RS08870at 1777.305 kb on + strand, within A4249_RS08870at 1777.305 kb on + strand, within A4249_RS08870at 1777.306 kb on - strand, within A4249_RS08870at 1777.306 kb on - strand, within A4249_RS08870

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Inosine 0.3728 mM (C)
remove
1,775,238 + A4249_RS08855 0.76 -0.5
1,775,238 + A4249_RS08855 0.76 +2.1
1,775,239 - A4249_RS08855 0.76 +1.1
1,775,455 - +1.5
1,775,508 + +1.1
1,775,698 + A4249_RS08860 0.16 +0.1
1,775,698 + A4249_RS08860 0.16 +0.8
1,775,698 + A4249_RS08860 0.16 -0.1
1,775,698 + A4249_RS08860 0.16 +1.1
1,775,698 + A4249_RS08860 0.16 -0.1
1,775,698 + A4249_RS08860 0.16 -0.3
1,775,699 - A4249_RS08860 0.16 +0.2
1,775,699 - A4249_RS08860 0.16 -0.0
1,775,699 - A4249_RS08860 0.16 +0.0
1,775,699 - A4249_RS08860 0.16 +0.8
1,775,699 - A4249_RS08860 0.16 -0.2
1,775,699 - A4249_RS08860 0.16 -0.5
1,775,699 - A4249_RS08860 0.16 +0.3
1,775,699 - A4249_RS08860 0.16 +0.7
1,775,716 + A4249_RS08860 0.19 +0.5
1,775,716 + A4249_RS08860 0.19 -0.5
1,775,716 + A4249_RS08860 0.19 +0.4
1,775,717 - A4249_RS08860 0.20 +0.4
1,775,717 - A4249_RS08860 0.20 -0.3
1,775,717 - A4249_RS08860 0.20 +0.0
1,775,717 - A4249_RS08860 0.20 -0.1
1,775,717 - A4249_RS08860 0.20 -2.2
1,775,717 - A4249_RS08860 0.20 -0.1
1,775,717 - A4249_RS08860 0.20 -0.2
1,775,755 + A4249_RS08860 0.27 -0.5
1,775,755 + A4249_RS08860 0.27 +0.6
1,775,755 + A4249_RS08860 0.27 +0.3
1,775,756 - A4249_RS08860 0.27 +0.3
1,775,756 - A4249_RS08860 0.27 -0.9
1,775,756 - A4249_RS08860 0.27 +1.4
1,775,756 - A4249_RS08860 0.27 +0.3
1,775,941 + A4249_RS08860 0.64 -0.9
1,775,941 + A4249_RS08860 0.64 -0.1
1,775,942 - A4249_RS08860 0.64 +0.5
1,776,001 + A4249_RS08860 0.76 -0.9
1,776,002 - A4249_RS08860 0.76 +2.2
1,776,356 + A4249_RS08865 0.62 -2.3
1,776,357 - A4249_RS08865 0.63 -1.1
1,776,480 + +0.7
1,776,481 - -0.0
1,776,803 + A4249_RS08870 0.29 -1.2
1,776,863 + A4249_RS08870 0.35 -0.3
1,776,863 + A4249_RS08870 0.35 +0.9
1,776,863 + A4249_RS08870 0.35 -0.9
1,776,863 + A4249_RS08870 0.35 -0.4
1,776,864 - A4249_RS08870 0.35 -0.3
1,776,864 - A4249_RS08870 0.35 +1.4
1,776,864 - A4249_RS08870 0.35 +0.7
1,776,864 - A4249_RS08870 0.35 -0.3
1,776,864 - A4249_RS08870 0.35 +2.2
1,777,284 + A4249_RS08870 0.78 -0.5
1,777,285 - A4249_RS08870 0.79 +0.4
1,777,305 + A4249_RS08870 0.81 -0.8
1,777,305 + A4249_RS08870 0.81 +0.3
1,777,305 + A4249_RS08870 0.81 -0.3
1,777,306 - A4249_RS08870 0.81 -0.5
1,777,306 - A4249_RS08870 0.81 +0.8

Or see this region's nucleotide sequence