Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08780

Experiment: Inosine 0.3728 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS08775 and A4249_RS08780 are separated by 7 nucleotidesA4249_RS08780 and A4249_RS08785 are separated by 110 nucleotidesA4249_RS08785 and A4249_RS08790 are separated by 8 nucleotides A4249_RS08775: A4249_RS08775 - tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA, at 1,759,726 to 1,760,811 _RS08775 A4249_RS08780: A4249_RS08780 - pyridoxamine 5'-phosphate oxidase, at 1,760,819 to 1,761,493 _RS08780 A4249_RS08785: A4249_RS08785 - DnaJ C-terminal domain-containing protein, at 1,761,604 to 1,762,350 _RS08785 A4249_RS08790: A4249_RS08790 - chorismate synthase, at 1,762,359 to 1,763,444 _RS08790 Position (kb) 1760 1761 1762Strain fitness (log2 ratio) -2 -1 0 1 2at 1760.224 kb on + strand, within A4249_RS08775at 1760.224 kb on + strand, within A4249_RS08775at 1760.224 kb on + strand, within A4249_RS08775at 1760.224 kb on + strand, within A4249_RS08775at 1760.225 kb on - strand, within A4249_RS08775at 1760.226 kb on + strand, within A4249_RS08775at 1760.227 kb on - strand, within A4249_RS08775at 1760.740 kb on + strandat 1760.740 kb on + strandat 1760.741 kb on - strandat 1760.741 kb on - strandat 1760.741 kb on - strandat 1760.741 kb on - strandat 1760.773 kb on + strandat 1760.774 kb on - strandat 1760.774 kb on - strandat 1760.779 kb on + strandat 1760.780 kb on - strandat 1760.780 kb on - strandat 1760.780 kb on - strandat 1761.439 kb on - strandat 1761.451 kb on - strandat 1761.504 kb on + strandat 1761.504 kb on + strandat 1761.504 kb on + strandat 1761.504 kb on + strandat 1761.505 kb on - strandat 1761.505 kb on - strandat 1761.505 kb on - strandat 1761.505 kb on - strandat 1761.505 kb on - strandat 1761.669 kb on - strandat 1761.669 kb on - strandat 1761.669 kb on - strandat 1761.796 kb on + strand, within A4249_RS08785at 1761.797 kb on - strand, within A4249_RS08785at 1762.021 kb on + strand, within A4249_RS08785at 1762.021 kb on + strand, within A4249_RS08785at 1762.021 kb on + strand, within A4249_RS08785at 1762.021 kb on + strand, within A4249_RS08785at 1762.021 kb on + strand, within A4249_RS08785at 1762.022 kb on - strand, within A4249_RS08785at 1762.022 kb on - strand, within A4249_RS08785at 1762.022 kb on - strand, within A4249_RS08785at 1762.022 kb on - strand, within A4249_RS08785at 1762.022 kb on - strand, within A4249_RS08785at 1762.301 kb on + strandat 1762.301 kb on + strandat 1762.301 kb on + strandat 1762.301 kb on + strandat 1762.301 kb on + strandat 1762.302 kb on - strandat 1762.302 kb on - strandat 1762.349 kb on - strandat 1762.349 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Inosine 0.3728 mM (C)
remove
1,760,224 + A4249_RS08775 0.46 -1.5
1,760,224 + A4249_RS08775 0.46 +0.2
1,760,224 + A4249_RS08775 0.46 -0.8
1,760,224 + A4249_RS08775 0.46 +0.9
1,760,225 - A4249_RS08775 0.46 +1.7
1,760,226 + A4249_RS08775 0.46 -0.6
1,760,227 - A4249_RS08775 0.46 +0.3
1,760,740 + -0.6
1,760,740 + +1.1
1,760,741 - +0.3
1,760,741 - +0.5
1,760,741 - +1.9
1,760,741 - +0.3
1,760,773 + +0.3
1,760,774 - +0.3
1,760,774 - +1.3
1,760,779 + -0.3
1,760,780 - +0.7
1,760,780 - +0.6
1,760,780 - +0.3
1,761,439 - +0.2
1,761,451 - +1.2
1,761,504 + -0.7
1,761,504 + -0.3
1,761,504 + -0.7
1,761,504 + -1.9
1,761,505 - +0.8
1,761,505 - -0.5
1,761,505 - +0.1
1,761,505 - -0.5
1,761,505 - +0.3
1,761,669 - +0.2
1,761,669 - +0.2
1,761,669 - -1.4
1,761,796 + A4249_RS08785 0.26 -0.1
1,761,797 - A4249_RS08785 0.26 -0.7
1,762,021 + A4249_RS08785 0.56 +0.2
1,762,021 + A4249_RS08785 0.56 +2.1
1,762,021 + A4249_RS08785 0.56 -0.3
1,762,021 + A4249_RS08785 0.56 +0.4
1,762,021 + A4249_RS08785 0.56 -1.1
1,762,022 - A4249_RS08785 0.56 -0.1
1,762,022 - A4249_RS08785 0.56 -0.8
1,762,022 - A4249_RS08785 0.56 -1.4
1,762,022 - A4249_RS08785 0.56 +1.5
1,762,022 - A4249_RS08785 0.56 +0.9
1,762,301 + +1.1
1,762,301 + -1.4
1,762,301 + -1.6
1,762,301 + -0.3
1,762,301 + +0.2
1,762,302 - -0.5
1,762,302 - -0.1
1,762,349 - -0.3
1,762,349 - -0.3

Or see this region's nucleotide sequence