Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08550

Experiment: Inosine 0.3728 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS08540 and A4249_RS08545 are separated by 2 nucleotidesA4249_RS08545 and A4249_RS08550 overlap by 4 nucleotidesA4249_RS08550 and A4249_RS08555 are separated by 90 nucleotides A4249_RS08540: A4249_RS08540 - flagellar basal body P-ring protein FlgI, at 1,711,624 to 1,712,745 _RS08540 A4249_RS08545: A4249_RS08545 - rod-binding protein, at 1,712,748 to 1,713,050 _RS08545 A4249_RS08550: A4249_RS08550 - flagellar basal-body protein FlbY, at 1,713,047 to 1,713,484 _RS08550 A4249_RS08555: A4249_RS08555 - EAL domain-containing protein, at 1,713,575 to 1,715,152 _RS08555 Position (kb) 1713 1714Strain fitness (log2 ratio) -2 -1 0 1 2at 1712.053 kb on + strand, within A4249_RS08540at 1712.053 kb on + strand, within A4249_RS08540at 1712.053 kb on + strand, within A4249_RS08540at 1712.053 kb on + strand, within A4249_RS08540at 1712.054 kb on - strand, within A4249_RS08540at 1712.054 kb on - strand, within A4249_RS08540at 1712.054 kb on - strand, within A4249_RS08540at 1712.054 kb on - strand, within A4249_RS08540at 1712.054 kb on - strand, within A4249_RS08540at 1712.054 kb on - strand, within A4249_RS08540at 1712.199 kb on + strand, within A4249_RS08540at 1712.199 kb on + strand, within A4249_RS08540at 1712.199 kb on + strand, within A4249_RS08540at 1712.199 kb on + strand, within A4249_RS08540at 1712.200 kb on - strand, within A4249_RS08540at 1712.200 kb on - strand, within A4249_RS08540at 1712.200 kb on - strand, within A4249_RS08540at 1712.200 kb on - strand, within A4249_RS08540at 1712.279 kb on - strand, within A4249_RS08540at 1712.308 kb on - strand, within A4249_RS08540at 1712.392 kb on - strand, within A4249_RS08540at 1712.492 kb on + strand, within A4249_RS08540at 1712.492 kb on + strand, within A4249_RS08540at 1712.493 kb on - strand, within A4249_RS08540at 1712.493 kb on - strand, within A4249_RS08540at 1712.518 kb on - strand, within A4249_RS08540at 1713.002 kb on + strand, within A4249_RS08545at 1713.002 kb on + strand, within A4249_RS08545at 1713.002 kb on + strand, within A4249_RS08545at 1713.002 kb on + strand, within A4249_RS08545at 1713.002 kb on + strand, within A4249_RS08545at 1713.002 kb on + strand, within A4249_RS08545at 1713.002 kb on + strand, within A4249_RS08545at 1713.002 kb on + strand, within A4249_RS08545at 1713.002 kb on + strand, within A4249_RS08545at 1713.003 kb on - strand, within A4249_RS08545at 1713.003 kb on - strand, within A4249_RS08545at 1713.003 kb on - strand, within A4249_RS08545at 1713.005 kb on + strand, within A4249_RS08545at 1713.005 kb on + strand, within A4249_RS08545at 1713.005 kb on + strand, within A4249_RS08545at 1713.005 kb on + strand, within A4249_RS08545at 1713.005 kb on + strand, within A4249_RS08545at 1713.005 kb on + strand, within A4249_RS08545at 1713.005 kb on + strand, within A4249_RS08545at 1713.006 kb on - strand, within A4249_RS08545at 1713.419 kb on + strand, within A4249_RS08550at 1713.419 kb on + strand, within A4249_RS08550at 1713.419 kb on + strand, within A4249_RS08550at 1713.527 kb on + strandat 1713.527 kb on + strandat 1713.527 kb on + strandat 1713.542 kb on - strandat 1713.542 kb on - strandat 1713.542 kb on - strandat 1713.548 kb on + strandat 1713.597 kb on + strandat 1713.597 kb on + strandat 1713.597 kb on + strandat 1713.598 kb on - strandat 1713.598 kb on - strandat 1713.752 kb on - strand, within A4249_RS08555at 1713.752 kb on - strand, within A4249_RS08555at 1713.752 kb on - strand, within A4249_RS08555at 1713.790 kb on + strand, within A4249_RS08555at 1713.791 kb on - strand, within A4249_RS08555at 1713.902 kb on + strand, within A4249_RS08555at 1713.902 kb on + strand, within A4249_RS08555at 1713.902 kb on + strand, within A4249_RS08555at 1713.902 kb on + strand, within A4249_RS08555at 1713.903 kb on - strand, within A4249_RS08555at 1713.903 kb on - strand, within A4249_RS08555at 1713.903 kb on - strand, within A4249_RS08555at 1713.903 kb on - strand, within A4249_RS08555at 1713.903 kb on - strand, within A4249_RS08555

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine 0.3728 mM (C)
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1,712,053 + A4249_RS08540 0.38 -0.5
1,712,053 + A4249_RS08540 0.38 -0.4
1,712,053 + A4249_RS08540 0.38 -1.2
1,712,053 + A4249_RS08540 0.38 +0.1
1,712,054 - A4249_RS08540 0.38 +0.6
1,712,054 - A4249_RS08540 0.38 +0.2
1,712,054 - A4249_RS08540 0.38 -0.9
1,712,054 - A4249_RS08540 0.38 -2.5
1,712,054 - A4249_RS08540 0.38 +0.1
1,712,054 - A4249_RS08540 0.38 +0.7
1,712,199 + A4249_RS08540 0.51 -0.3
1,712,199 + A4249_RS08540 0.51 -1.7
1,712,199 + A4249_RS08540 0.51 +0.2
1,712,199 + A4249_RS08540 0.51 -0.2
1,712,200 - A4249_RS08540 0.51 -0.1
1,712,200 - A4249_RS08540 0.51 -0.5
1,712,200 - A4249_RS08540 0.51 -0.3
1,712,200 - A4249_RS08540 0.51 +1.0
1,712,279 - A4249_RS08540 0.58 -0.6
1,712,308 - A4249_RS08540 0.61 +0.7
1,712,392 - A4249_RS08540 0.68 -0.5
1,712,492 + A4249_RS08540 0.77 -2.2
1,712,492 + A4249_RS08540 0.77 +0.5
1,712,493 - A4249_RS08540 0.77 +0.6
1,712,493 - A4249_RS08540 0.77 +0.8
1,712,518 - A4249_RS08540 0.80 -0.7
1,713,002 + A4249_RS08545 0.84 +0.2
1,713,002 + A4249_RS08545 0.84 +1.8
1,713,002 + A4249_RS08545 0.84 -0.7
1,713,002 + A4249_RS08545 0.84 -1.2
1,713,002 + A4249_RS08545 0.84 +0.1
1,713,002 + A4249_RS08545 0.84 +0.4
1,713,002 + A4249_RS08545 0.84 -0.4
1,713,002 + A4249_RS08545 0.84 +0.2
1,713,002 + A4249_RS08545 0.84 +0.4
1,713,003 - A4249_RS08545 0.84 -0.1
1,713,003 - A4249_RS08545 0.84 -1.1
1,713,003 - A4249_RS08545 0.84 +0.3
1,713,005 + A4249_RS08545 0.85 -1.0
1,713,005 + A4249_RS08545 0.85 -0.4
1,713,005 + A4249_RS08545 0.85 +0.3
1,713,005 + A4249_RS08545 0.85 -0.3
1,713,005 + A4249_RS08545 0.85 -0.7
1,713,005 + A4249_RS08545 0.85 +0.9
1,713,005 + A4249_RS08545 0.85 -0.7
1,713,006 - A4249_RS08545 0.85 -0.5
1,713,419 + A4249_RS08550 0.85 +0.3
1,713,419 + A4249_RS08550 0.85 -2.2
1,713,419 + A4249_RS08550 0.85 -2.0
1,713,527 + -0.3
1,713,527 + -0.1
1,713,527 + +0.1
1,713,542 - +0.1
1,713,542 - +0.2
1,713,542 - +1.1
1,713,548 + -1.5
1,713,597 + +0.5
1,713,597 + -0.4
1,713,597 + -0.2
1,713,598 - +0.4
1,713,598 - +0.1
1,713,752 - A4249_RS08555 0.11 -0.4
1,713,752 - A4249_RS08555 0.11 -0.8
1,713,752 - A4249_RS08555 0.11 -0.7
1,713,790 + A4249_RS08555 0.14 -0.6
1,713,791 - A4249_RS08555 0.14 -0.7
1,713,902 + A4249_RS08555 0.21 -0.1
1,713,902 + A4249_RS08555 0.21 -0.9
1,713,902 + A4249_RS08555 0.21 +0.5
1,713,902 + A4249_RS08555 0.21 +0.5
1,713,903 - A4249_RS08555 0.21 -1.5
1,713,903 - A4249_RS08555 0.21 -1.2
1,713,903 - A4249_RS08555 0.21 +0.4
1,713,903 - A4249_RS08555 0.21 -1.7
1,713,903 - A4249_RS08555 0.21 -1.4

Or see this region's nucleotide sequence