Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08370

Experiment: Inosine 0.3728 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS08365 and A4249_RS08370 are separated by 36 nucleotidesA4249_RS08370 and A4249_RS08375 are separated by 2 nucleotides A4249_RS08365: A4249_RS08365 - nicotinate phosphoribosyltransferase, at 1,678,622 to 1,679,917 _RS08365 A4249_RS08370: A4249_RS08370 - polysaccharide deacetylase family protein, at 1,679,954 to 1,680,694 _RS08370 A4249_RS08375: A4249_RS08375 - hypothetical protein, at 1,680,697 to 1,681,593 _RS08375 Position (kb) 1679 1680 1681Strain fitness (log2 ratio) -2 -1 0 1 2at 1678.962 kb on - strand, within A4249_RS08365at 1678.988 kb on + strand, within A4249_RS08365at 1678.988 kb on + strand, within A4249_RS08365at 1678.988 kb on + strand, within A4249_RS08365at 1678.988 kb on + strand, within A4249_RS08365at 1678.988 kb on + strand, within A4249_RS08365at 1678.988 kb on + strand, within A4249_RS08365at 1678.988 kb on + strand, within A4249_RS08365at 1678.988 kb on + strand, within A4249_RS08365at 1678.988 kb on + strand, within A4249_RS08365at 1678.988 kb on + strand, within A4249_RS08365at 1678.988 kb on + strand, within A4249_RS08365at 1678.988 kb on + strand, within A4249_RS08365at 1678.988 kb on + strand, within A4249_RS08365at 1678.988 kb on + strand, within A4249_RS08365at 1678.988 kb on + strand, within A4249_RS08365at 1678.988 kb on + strand, within A4249_RS08365at 1678.989 kb on - strand, within A4249_RS08365at 1678.989 kb on - strand, within A4249_RS08365at 1678.989 kb on - strand, within A4249_RS08365at 1678.989 kb on - strand, within A4249_RS08365at 1678.989 kb on - strand, within A4249_RS08365at 1678.989 kb on - strand, within A4249_RS08365at 1678.989 kb on - strand, within A4249_RS08365at 1678.989 kb on - strand, within A4249_RS08365at 1679.117 kb on + strand, within A4249_RS08365at 1679.117 kb on + strand, within A4249_RS08365at 1679.118 kb on - strand, within A4249_RS08365at 1679.118 kb on - strand, within A4249_RS08365at 1679.371 kb on - strand, within A4249_RS08365at 1679.399 kb on + strand, within A4249_RS08365at 1679.400 kb on - strand, within A4249_RS08365at 1679.400 kb on - strand, within A4249_RS08365at 1679.400 kb on - strand, within A4249_RS08365at 1679.400 kb on - strand, within A4249_RS08365at 1679.428 kb on + strand, within A4249_RS08365at 1679.429 kb on + strand, within A4249_RS08365at 1679.429 kb on + strand, within A4249_RS08365at 1679.429 kb on + strand, within A4249_RS08365at 1679.429 kb on + strand, within A4249_RS08365at 1679.429 kb on + strand, within A4249_RS08365at 1679.429 kb on + strand, within A4249_RS08365at 1679.430 kb on - strand, within A4249_RS08365at 1679.430 kb on - strand, within A4249_RS08365at 1679.430 kb on - strand, within A4249_RS08365at 1679.864 kb on + strandat 1679.929 kb on - strandat 1679.929 kb on - strandat 1679.997 kb on - strandat 1680.125 kb on + strand, within A4249_RS08370at 1680.125 kb on + strand, within A4249_RS08370at 1680.125 kb on + strand, within A4249_RS08370at 1680.125 kb on + strand, within A4249_RS08370at 1680.125 kb on + strand, within A4249_RS08370at 1680.125 kb on + strand, within A4249_RS08370at 1680.125 kb on + strand, within A4249_RS08370at 1680.125 kb on + strand, within A4249_RS08370at 1680.125 kb on + strand, within A4249_RS08370at 1680.125 kb on + strand, within A4249_RS08370at 1680.125 kb on + strand, within A4249_RS08370at 1680.125 kb on + strand, within A4249_RS08370at 1680.126 kb on - strand, within A4249_RS08370at 1680.126 kb on - strand, within A4249_RS08370at 1680.126 kb on - strand, within A4249_RS08370at 1680.126 kb on - strand, within A4249_RS08370at 1680.126 kb on - strand, within A4249_RS08370at 1680.126 kb on - strand, within A4249_RS08370at 1680.126 kb on - strand, within A4249_RS08370at 1680.128 kb on + strand, within A4249_RS08370at 1680.128 kb on + strand, within A4249_RS08370at 1680.128 kb on + strand, within A4249_RS08370at 1680.128 kb on + strand, within A4249_RS08370at 1680.128 kb on + strand, within A4249_RS08370at 1680.129 kb on - strand, within A4249_RS08370at 1680.129 kb on - strand, within A4249_RS08370at 1680.236 kb on + strand, within A4249_RS08370at 1680.236 kb on + strand, within A4249_RS08370at 1680.236 kb on + strand, within A4249_RS08370at 1680.236 kb on + strand, within A4249_RS08370at 1680.236 kb on + strand, within A4249_RS08370at 1680.237 kb on - strand, within A4249_RS08370at 1680.237 kb on - strand, within A4249_RS08370at 1680.591 kb on - strand, within A4249_RS08370at 1680.774 kb on - strandat 1680.936 kb on - strand, within A4249_RS08375at 1680.936 kb on - strand, within A4249_RS08375at 1681.057 kb on - strand, within A4249_RS08375at 1681.256 kb on + strand, within A4249_RS08375at 1681.257 kb on - strand, within A4249_RS08375at 1681.257 kb on - strand, within A4249_RS08375at 1681.310 kb on + strand, within A4249_RS08375at 1681.311 kb on - strand, within A4249_RS08375at 1681.587 kb on + strandat 1681.587 kb on + strandat 1681.588 kb on - strandat 1681.629 kb on + strandat 1681.629 kb on + strandat 1681.630 kb on - strandat 1681.630 kb on - strandat 1681.684 kb on + strandat 1681.685 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Inosine 0.3728 mM (C)
remove
1,678,962 - A4249_RS08365 0.26 -0.2
1,678,988 + A4249_RS08365 0.28 +0.0
1,678,988 + A4249_RS08365 0.28 +0.1
1,678,988 + A4249_RS08365 0.28 +0.7
1,678,988 + A4249_RS08365 0.28 -0.4
1,678,988 + A4249_RS08365 0.28 +0.6
1,678,988 + A4249_RS08365 0.28 +0.9
1,678,988 + A4249_RS08365 0.28 -0.8
1,678,988 + A4249_RS08365 0.28 -0.6
1,678,988 + A4249_RS08365 0.28 -0.0
1,678,988 + A4249_RS08365 0.28 +1.2
1,678,988 + A4249_RS08365 0.28 +0.3
1,678,988 + A4249_RS08365 0.28 -0.3
1,678,988 + A4249_RS08365 0.28 -0.8
1,678,988 + A4249_RS08365 0.28 -0.5
1,678,988 + A4249_RS08365 0.28 -0.3
1,678,988 + A4249_RS08365 0.28 -1.1
1,678,989 - A4249_RS08365 0.28 -0.4
1,678,989 - A4249_RS08365 0.28 -0.0
1,678,989 - A4249_RS08365 0.28 -0.6
1,678,989 - A4249_RS08365 0.28 -0.3
1,678,989 - A4249_RS08365 0.28 +0.7
1,678,989 - A4249_RS08365 0.28 -0.3
1,678,989 - A4249_RS08365 0.28 -0.2
1,678,989 - A4249_RS08365 0.28 -0.3
1,679,117 + A4249_RS08365 0.38 +0.3
1,679,117 + A4249_RS08365 0.38 -0.3
1,679,118 - A4249_RS08365 0.38 +0.0
1,679,118 - A4249_RS08365 0.38 -0.3
1,679,371 - A4249_RS08365 0.58 -0.0
1,679,399 + A4249_RS08365 0.60 +0.2
1,679,400 - A4249_RS08365 0.60 -0.0
1,679,400 - A4249_RS08365 0.60 -0.2
1,679,400 - A4249_RS08365 0.60 -0.9
1,679,400 - A4249_RS08365 0.60 -0.1
1,679,428 + A4249_RS08365 0.62 -0.8
1,679,429 + A4249_RS08365 0.62 -0.5
1,679,429 + A4249_RS08365 0.62 -0.4
1,679,429 + A4249_RS08365 0.62 +0.5
1,679,429 + A4249_RS08365 0.62 -0.3
1,679,429 + A4249_RS08365 0.62 +0.3
1,679,429 + A4249_RS08365 0.62 -1.5
1,679,430 - A4249_RS08365 0.62 -1.0
1,679,430 - A4249_RS08365 0.62 +0.3
1,679,430 - A4249_RS08365 0.62 -1.2
1,679,864 + -0.8
1,679,929 - +0.3
1,679,929 - -0.7
1,679,997 - +1.1
1,680,125 + A4249_RS08370 0.23 -0.1
1,680,125 + A4249_RS08370 0.23 -0.1
1,680,125 + A4249_RS08370 0.23 +0.1
1,680,125 + A4249_RS08370 0.23 +0.2
1,680,125 + A4249_RS08370 0.23 +0.5
1,680,125 + A4249_RS08370 0.23 +0.4
1,680,125 + A4249_RS08370 0.23 +0.7
1,680,125 + A4249_RS08370 0.23 +1.1
1,680,125 + A4249_RS08370 0.23 -1.8
1,680,125 + A4249_RS08370 0.23 -1.0
1,680,125 + A4249_RS08370 0.23 +1.2
1,680,125 + A4249_RS08370 0.23 +1.6
1,680,126 - A4249_RS08370 0.23 +1.1
1,680,126 - A4249_RS08370 0.23 +0.9
1,680,126 - A4249_RS08370 0.23 +0.2
1,680,126 - A4249_RS08370 0.23 +0.5
1,680,126 - A4249_RS08370 0.23 -1.3
1,680,126 - A4249_RS08370 0.23 +0.5
1,680,126 - A4249_RS08370 0.23 +0.7
1,680,128 + A4249_RS08370 0.23 -0.1
1,680,128 + A4249_RS08370 0.23 -0.3
1,680,128 + A4249_RS08370 0.23 +1.2
1,680,128 + A4249_RS08370 0.23 +0.6
1,680,128 + A4249_RS08370 0.23 +0.5
1,680,129 - A4249_RS08370 0.24 -0.8
1,680,129 - A4249_RS08370 0.24 -0.4
1,680,236 + A4249_RS08370 0.38 +0.7
1,680,236 + A4249_RS08370 0.38 +1.2
1,680,236 + A4249_RS08370 0.38 -0.6
1,680,236 + A4249_RS08370 0.38 +0.7
1,680,236 + A4249_RS08370 0.38 +0.2
1,680,237 - A4249_RS08370 0.38 +1.5
1,680,237 - A4249_RS08370 0.38 +0.9
1,680,591 - A4249_RS08370 0.86 +0.5
1,680,774 - -1.0
1,680,936 - A4249_RS08375 0.27 -1.3
1,680,936 - A4249_RS08375 0.27 +0.1
1,681,057 - A4249_RS08375 0.40 +0.1
1,681,256 + A4249_RS08375 0.62 -0.3
1,681,257 - A4249_RS08375 0.62 +2.6
1,681,257 - A4249_RS08375 0.62 -0.5
1,681,310 + A4249_RS08375 0.68 -0.3
1,681,311 - A4249_RS08375 0.68 -0.1
1,681,587 + +1.5
1,681,587 + -0.4
1,681,588 - +0.2
1,681,629 + -0.8
1,681,629 + -0.6
1,681,630 - -0.4
1,681,630 - -1.5
1,681,684 + +0.8
1,681,685 - -1.9

Or see this region's nucleotide sequence