Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS04645

Experiment: Inosine 0.3728 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS04640 and A4249_RS04645 overlap by 1 nucleotidesA4249_RS04645 and A4249_RS04650 overlap by 4 nucleotidesA4249_RS04650 and A4249_RS16245 are separated by 31 nucleotides A4249_RS04640: A4249_RS04640 - serine--tRNA ligase, at 964,011 to 965,426 _RS04640 A4249_RS04645: A4249_RS04645 - 5'/3'-nucleotidase SurE, at 965,426 to 966,220 _RS04645 A4249_RS04650: A4249_RS04650 - protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 966,217 to 966,861 _RS04650 A4249_RS16245: A4249_RS16245 - OmpA family protein, at 966,893 to 967,597 _RS16245 Position (kb) 965 966 967Strain fitness (log2 ratio) -2 -1 0 1at 965.431 kb on + strandat 965.431 kb on + strandat 965.431 kb on + strandat 965.432 kb on - strandat 965.587 kb on - strand, within A4249_RS04645at 965.587 kb on - strand, within A4249_RS04645at 965.713 kb on + strand, within A4249_RS04645at 965.732 kb on + strand, within A4249_RS04645at 965.732 kb on + strand, within A4249_RS04645at 965.732 kb on + strand, within A4249_RS04645at 966.035 kb on + strand, within A4249_RS04645at 966.035 kb on + strand, within A4249_RS04645at 966.035 kb on + strand, within A4249_RS04645at 966.035 kb on + strand, within A4249_RS04645at 966.036 kb on - strand, within A4249_RS04645at 966.038 kb on + strand, within A4249_RS04645at 966.038 kb on + strand, within A4249_RS04645at 966.038 kb on + strand, within A4249_RS04645at 966.039 kb on - strand, within A4249_RS04645at 966.039 kb on - strand, within A4249_RS04645at 966.133 kb on + strand, within A4249_RS04645at 966.133 kb on + strand, within A4249_RS04645at 966.133 kb on + strand, within A4249_RS04645at 966.966 kb on + strand, within A4249_RS16245at 966.966 kb on + strand, within A4249_RS16245at 966.967 kb on - strand, within A4249_RS16245at 966.990 kb on + strand, within A4249_RS16245at 966.990 kb on + strand, within A4249_RS16245at 967.004 kb on + strand, within A4249_RS16245at 967.005 kb on - strand, within A4249_RS16245at 967.088 kb on + strand, within A4249_RS16245at 967.088 kb on + strand, within A4249_RS16245at 967.088 kb on + strand, within A4249_RS16245at 967.088 kb on + strand, within A4249_RS16245at 967.089 kb on - strand, within A4249_RS16245at 967.089 kb on - strand, within A4249_RS16245at 967.089 kb on - strand, within A4249_RS16245at 967.089 kb on - strand, within A4249_RS16245at 967.089 kb on - strand, within A4249_RS16245at 967.089 kb on - strand, within A4249_RS16245at 967.090 kb on + strand, within A4249_RS16245at 967.090 kb on + strand, within A4249_RS16245at 967.090 kb on + strand, within A4249_RS16245at 967.090 kb on + strand, within A4249_RS16245at 967.090 kb on + strand, within A4249_RS16245at 967.090 kb on + strand, within A4249_RS16245at 967.090 kb on + strand, within A4249_RS16245at 967.091 kb on - strand, within A4249_RS16245at 967.091 kb on - strand, within A4249_RS16245at 967.091 kb on - strand, within A4249_RS16245at 967.091 kb on - strand, within A4249_RS16245at 967.091 kb on - strand, within A4249_RS16245at 967.091 kb on - strand, within A4249_RS16245at 967.102 kb on + strand, within A4249_RS16245at 967.135 kb on + strand, within A4249_RS16245at 967.135 kb on + strand, within A4249_RS16245at 967.170 kb on + strand, within A4249_RS16245at 967.170 kb on + strand, within A4249_RS16245at 967.170 kb on + strand, within A4249_RS16245at 967.170 kb on + strand, within A4249_RS16245at 967.171 kb on - strand, within A4249_RS16245at 967.176 kb on + strand, within A4249_RS16245at 967.176 kb on + strand, within A4249_RS16245at 967.176 kb on + strand, within A4249_RS16245at 967.176 kb on + strand, within A4249_RS16245at 967.177 kb on - strand, within A4249_RS16245at 967.177 kb on - strand, within A4249_RS16245at 967.177 kb on - strand, within A4249_RS16245at 967.177 kb on - strand, within A4249_RS16245at 967.187 kb on + strand, within A4249_RS16245at 967.187 kb on + strand, within A4249_RS16245at 967.188 kb on - strand, within A4249_RS16245at 967.188 kb on - strand, within A4249_RS16245

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine 0.3728 mM (C)
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965,431 + -0.0
965,431 + +0.2
965,431 + +0.7
965,432 - -0.5
965,587 - A4249_RS04645 0.20 -0.2
965,587 - A4249_RS04645 0.20 -0.9
965,713 + A4249_RS04645 0.36 -1.3
965,732 + A4249_RS04645 0.38 -1.3
965,732 + A4249_RS04645 0.38 -0.8
965,732 + A4249_RS04645 0.38 -0.0
966,035 + A4249_RS04645 0.77 -0.5
966,035 + A4249_RS04645 0.77 -0.3
966,035 + A4249_RS04645 0.77 -0.1
966,035 + A4249_RS04645 0.77 -1.6
966,036 - A4249_RS04645 0.77 -0.6
966,038 + A4249_RS04645 0.77 -0.3
966,038 + A4249_RS04645 0.77 +0.2
966,038 + A4249_RS04645 0.77 -0.7
966,039 - A4249_RS04645 0.77 +0.7
966,039 - A4249_RS04645 0.77 -0.8
966,133 + A4249_RS04645 0.89 +1.4
966,133 + A4249_RS04645 0.89 -0.6
966,133 + A4249_RS04645 0.89 -0.4
966,966 + A4249_RS16245 0.10 -0.6
966,966 + A4249_RS16245 0.10 +0.1
966,967 - A4249_RS16245 0.10 +0.3
966,990 + A4249_RS16245 0.14 +0.0
966,990 + A4249_RS16245 0.14 -0.5
967,004 + A4249_RS16245 0.16 -1.2
967,005 - A4249_RS16245 0.16 +0.7
967,088 + A4249_RS16245 0.28 -0.2
967,088 + A4249_RS16245 0.28 +0.4
967,088 + A4249_RS16245 0.28 +0.6
967,088 + A4249_RS16245 0.28 -0.2
967,089 - A4249_RS16245 0.28 -0.3
967,089 - A4249_RS16245 0.28 +0.3
967,089 - A4249_RS16245 0.28 +0.1
967,089 - A4249_RS16245 0.28 -1.0
967,089 - A4249_RS16245 0.28 -0.6
967,089 - A4249_RS16245 0.28 +0.9
967,090 + A4249_RS16245 0.28 -1.2
967,090 + A4249_RS16245 0.28 +0.2
967,090 + A4249_RS16245 0.28 -0.6
967,090 + A4249_RS16245 0.28 -2.7
967,090 + A4249_RS16245 0.28 -0.2
967,090 + A4249_RS16245 0.28 -0.3
967,090 + A4249_RS16245 0.28 -0.9
967,091 - A4249_RS16245 0.28 -0.9
967,091 - A4249_RS16245 0.28 -0.1
967,091 - A4249_RS16245 0.28 +0.3
967,091 - A4249_RS16245 0.28 +0.7
967,091 - A4249_RS16245 0.28 -0.3
967,091 - A4249_RS16245 0.28 +0.2
967,102 + A4249_RS16245 0.30 -0.5
967,135 + A4249_RS16245 0.34 -0.7
967,135 + A4249_RS16245 0.34 -0.4
967,170 + A4249_RS16245 0.39 -0.0
967,170 + A4249_RS16245 0.39 -0.5
967,170 + A4249_RS16245 0.39 -0.1
967,170 + A4249_RS16245 0.39 +0.2
967,171 - A4249_RS16245 0.39 -0.1
967,176 + A4249_RS16245 0.40 +1.1
967,176 + A4249_RS16245 0.40 +1.1
967,176 + A4249_RS16245 0.40 +0.3
967,176 + A4249_RS16245 0.40 -0.5
967,177 - A4249_RS16245 0.40 +0.7
967,177 - A4249_RS16245 0.40 +0.8
967,177 - A4249_RS16245 0.40 -0.5
967,177 - A4249_RS16245 0.40 -0.1
967,187 + A4249_RS16245 0.42 +0.8
967,187 + A4249_RS16245 0.42 +0.2
967,188 - A4249_RS16245 0.42 +0.5
967,188 - A4249_RS16245 0.42 -0.4

Or see this region's nucleotide sequence