Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS04420

Experiment: Inosine 0.3728 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS04415 and A4249_RS04420 overlap by 1 nucleotidesA4249_RS04420 and A4249_RS04425 are separated by 353 nucleotides A4249_RS04415: A4249_RS04415 - sigma-54 dependent transcriptional regulator, at 913,471 to 914,802 _RS04415 A4249_RS04420: A4249_RS04420 - ATP-binding protein, at 914,802 to 916,517 _RS04420 A4249_RS04425: A4249_RS04425 - dicarboxylate/amino acid:cation symporter, at 916,871 to 918,226 _RS04425 Position (kb) 914 915 916 917Strain fitness (log2 ratio) -2 -1 0 1 2at 913.819 kb on + strand, within A4249_RS04415at 913.819 kb on + strand, within A4249_RS04415at 913.819 kb on + strand, within A4249_RS04415at 913.819 kb on + strand, within A4249_RS04415at 913.820 kb on - strand, within A4249_RS04415at 913.830 kb on + strand, within A4249_RS04415at 913.830 kb on + strand, within A4249_RS04415at 913.830 kb on + strand, within A4249_RS04415at 913.830 kb on + strand, within A4249_RS04415at 913.830 kb on + strand, within A4249_RS04415at 913.830 kb on + strand, within A4249_RS04415at 913.831 kb on - strand, within A4249_RS04415at 913.831 kb on - strand, within A4249_RS04415at 913.831 kb on - strand, within A4249_RS04415at 913.831 kb on - strand, within A4249_RS04415at 913.831 kb on - strand, within A4249_RS04415at 913.886 kb on + strand, within A4249_RS04415at 913.886 kb on + strand, within A4249_RS04415at 913.889 kb on + strand, within A4249_RS04415at 913.889 kb on + strand, within A4249_RS04415at 913.889 kb on + strand, within A4249_RS04415at 913.889 kb on + strand, within A4249_RS04415at 913.889 kb on + strand, within A4249_RS04415at 913.890 kb on - strand, within A4249_RS04415at 913.890 kb on - strand, within A4249_RS04415at 913.890 kb on - strand, within A4249_RS04415at 913.890 kb on - strand, within A4249_RS04415at 913.890 kb on - strand, within A4249_RS04415at 913.967 kb on - strand, within A4249_RS04415at 913.967 kb on - strand, within A4249_RS04415at 913.967 kb on - strand, within A4249_RS04415at 914.498 kb on + strand, within A4249_RS04415at 914.498 kb on + strand, within A4249_RS04415at 914.499 kb on - strand, within A4249_RS04415at 914.535 kb on + strand, within A4249_RS04415at 914.711 kb on + strandat 914.711 kb on + strandat 914.711 kb on + strandat 914.813 kb on + strandat 914.814 kb on - strandat 915.211 kb on + strand, within A4249_RS04420at 915.211 kb on + strand, within A4249_RS04420at 915.212 kb on - strand, within A4249_RS04420at 915.273 kb on + strand, within A4249_RS04420at 915.273 kb on + strand, within A4249_RS04420at 915.273 kb on + strand, within A4249_RS04420at 915.273 kb on + strand, within A4249_RS04420at 915.273 kb on + strand, within A4249_RS04420at 915.273 kb on + strand, within A4249_RS04420at 915.273 kb on + strand, within A4249_RS04420at 915.273 kb on + strand, within A4249_RS04420at 915.273 kb on + strand, within A4249_RS04420at 915.273 kb on + strand, within A4249_RS04420at 915.274 kb on - strand, within A4249_RS04420at 915.274 kb on - strand, within A4249_RS04420at 915.274 kb on - strand, within A4249_RS04420at 915.274 kb on - strand, within A4249_RS04420at 915.274 kb on - strand, within A4249_RS04420at 915.274 kb on - strand, within A4249_RS04420at 915.554 kb on + strand, within A4249_RS04420at 916.012 kb on + strand, within A4249_RS04420at 916.012 kb on + strand, within A4249_RS04420at 916.012 kb on + strand, within A4249_RS04420at 916.012 kb on + strand, within A4249_RS04420at 916.012 kb on + strand, within A4249_RS04420at 916.012 kb on + strand, within A4249_RS04420at 916.012 kb on + strand, within A4249_RS04420at 916.012 kb on + strand, within A4249_RS04420at 916.012 kb on + strand, within A4249_RS04420at 916.012 kb on + strand, within A4249_RS04420at 916.012 kb on + strand, within A4249_RS04420at 916.013 kb on - strand, within A4249_RS04420at 916.013 kb on - strand, within A4249_RS04420at 916.013 kb on - strand, within A4249_RS04420at 916.123 kb on + strand, within A4249_RS04420at 916.193 kb on + strand, within A4249_RS04420at 916.193 kb on + strand, within A4249_RS04420at 916.198 kb on + strand, within A4249_RS04420at 916.198 kb on + strand, within A4249_RS04420at 916.214 kb on - strand, within A4249_RS04420at 916.286 kb on + strand, within A4249_RS04420at 916.286 kb on + strand, within A4249_RS04420at 916.286 kb on + strand, within A4249_RS04420at 916.286 kb on + strand, within A4249_RS04420at 916.286 kb on + strand, within A4249_RS04420at 916.286 kb on + strand, within A4249_RS04420at 916.286 kb on + strand, within A4249_RS04420at 916.286 kb on + strand, within A4249_RS04420at 916.287 kb on - strand, within A4249_RS04420at 916.287 kb on - strand, within A4249_RS04420at 916.288 kb on + strand, within A4249_RS04420at 916.288 kb on + strand, within A4249_RS04420at 916.288 kb on + strand, within A4249_RS04420at 916.288 kb on + strand, within A4249_RS04420at 916.288 kb on + strand, within A4249_RS04420at 916.288 kb on + strand, within A4249_RS04420at 916.288 kb on + strand, within A4249_RS04420at 916.288 kb on + strand, within A4249_RS04420at 916.288 kb on + strand, within A4249_RS04420at 916.288 kb on + strand, within A4249_RS04420at 916.288 kb on + strand, within A4249_RS04420at 916.289 kb on - strand, within A4249_RS04420at 916.289 kb on - strand, within A4249_RS04420at 916.289 kb on - strand, within A4249_RS04420at 916.289 kb on - strand, within A4249_RS04420at 916.289 kb on - strand, within A4249_RS04420at 916.289 kb on - strand, within A4249_RS04420at 916.289 kb on - strand, within A4249_RS04420at 916.289 kb on - strand, within A4249_RS04420at 916.289 kb on - strand, within A4249_RS04420at 916.289 kb on - strand, within A4249_RS04420at 916.289 kb on - strand, within A4249_RS04420at 916.289 kb on - strand, within A4249_RS04420at 916.289 kb on - strand, within A4249_RS04420at 916.289 kb on - strand, within A4249_RS04420at 916.289 kb on - strand, within A4249_RS04420at 916.289 kb on - strand, within A4249_RS04420at 916.331 kb on + strand, within A4249_RS04420at 916.332 kb on - strand, within A4249_RS04420at 916.332 kb on - strand, within A4249_RS04420at 916.443 kb on + strandat 916.444 kb on - strandat 916.444 kb on - strandat 916.444 kb on - strandat 916.611 kb on + strandat 916.612 kb on - strandat 916.612 kb on - strandat 916.638 kb on - strandat 916.659 kb on - strandat 916.659 kb on - strandat 916.720 kb on - strandat 916.797 kb on - strandat 916.881 kb on + strandat 916.882 kb on - strandat 916.919 kb on + strandat 916.919 kb on + strandat 916.931 kb on + strandat 916.932 kb on - strandat 916.932 kb on - strandat 917.141 kb on + strand, within A4249_RS04425at 917.142 kb on - strand, within A4249_RS04425at 917.142 kb on - strand, within A4249_RS04425at 917.142 kb on - strand, within A4249_RS04425at 917.142 kb on - strand, within A4249_RS04425at 917.142 kb on - strand, within A4249_RS04425at 917.142 kb on - strand, within A4249_RS04425at 917.142 kb on - strand, within A4249_RS04425at 917.142 kb on - strand, within A4249_RS04425at 917.262 kb on - strand, within A4249_RS04425at 917.262 kb on - strand, within A4249_RS04425

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Inosine 0.3728 mM (C)
remove
913,819 + A4249_RS04415 0.26 -0.7
913,819 + A4249_RS04415 0.26 +0.8
913,819 + A4249_RS04415 0.26 +0.2
913,819 + A4249_RS04415 0.26 -0.5
913,820 - A4249_RS04415 0.26 -0.0
913,830 + A4249_RS04415 0.27 -0.8
913,830 + A4249_RS04415 0.27 -0.6
913,830 + A4249_RS04415 0.27 +0.2
913,830 + A4249_RS04415 0.27 +0.8
913,830 + A4249_RS04415 0.27 +0.2
913,830 + A4249_RS04415 0.27 -0.3
913,831 - A4249_RS04415 0.27 +1.0
913,831 - A4249_RS04415 0.27 -0.1
913,831 - A4249_RS04415 0.27 -0.5
913,831 - A4249_RS04415 0.27 +0.8
913,831 - A4249_RS04415 0.27 +0.9
913,886 + A4249_RS04415 0.31 -0.8
913,886 + A4249_RS04415 0.31 -0.0
913,889 + A4249_RS04415 0.31 +0.9
913,889 + A4249_RS04415 0.31 -0.2
913,889 + A4249_RS04415 0.31 -0.8
913,889 + A4249_RS04415 0.31 +0.1
913,889 + A4249_RS04415 0.31 +0.6
913,890 - A4249_RS04415 0.31 +1.2
913,890 - A4249_RS04415 0.31 +1.2
913,890 - A4249_RS04415 0.31 -0.3
913,890 - A4249_RS04415 0.31 +0.1
913,890 - A4249_RS04415 0.31 -0.5
913,967 - A4249_RS04415 0.37 +1.0
913,967 - A4249_RS04415 0.37 -0.7
913,967 - A4249_RS04415 0.37 +0.2
914,498 + A4249_RS04415 0.77 -0.9
914,498 + A4249_RS04415 0.77 -0.3
914,499 - A4249_RS04415 0.77 +0.4
914,535 + A4249_RS04415 0.80 -1.0
914,711 + -0.3
914,711 + +0.0
914,711 + -0.1
914,813 + -0.0
914,814 - +0.3
915,211 + A4249_RS04420 0.24 -0.4
915,211 + A4249_RS04420 0.24 -0.5
915,212 - A4249_RS04420 0.24 -0.0
915,273 + A4249_RS04420 0.27 -1.3
915,273 + A4249_RS04420 0.27 -0.4
915,273 + A4249_RS04420 0.27 -0.7
915,273 + A4249_RS04420 0.27 -0.6
915,273 + A4249_RS04420 0.27 +0.8
915,273 + A4249_RS04420 0.27 +0.7
915,273 + A4249_RS04420 0.27 -1.5
915,273 + A4249_RS04420 0.27 -0.8
915,273 + A4249_RS04420 0.27 -0.2
915,273 + A4249_RS04420 0.27 -0.0
915,274 - A4249_RS04420 0.28 -0.2
915,274 - A4249_RS04420 0.28 -0.4
915,274 - A4249_RS04420 0.28 -0.7
915,274 - A4249_RS04420 0.28 -1.0
915,274 - A4249_RS04420 0.28 -0.7
915,274 - A4249_RS04420 0.28 +0.1
915,554 + A4249_RS04420 0.44 -0.3
916,012 + A4249_RS04420 0.71 +0.7
916,012 + A4249_RS04420 0.71 +0.4
916,012 + A4249_RS04420 0.71 -0.0
916,012 + A4249_RS04420 0.71 +0.7
916,012 + A4249_RS04420 0.71 -0.9
916,012 + A4249_RS04420 0.71 -0.3
916,012 + A4249_RS04420 0.71 +1.1
916,012 + A4249_RS04420 0.71 +0.6
916,012 + A4249_RS04420 0.71 +0.8
916,012 + A4249_RS04420 0.71 -0.3
916,012 + A4249_RS04420 0.71 +0.2
916,013 - A4249_RS04420 0.71 +0.8
916,013 - A4249_RS04420 0.71 +2.0
916,013 - A4249_RS04420 0.71 -0.7
916,123 + A4249_RS04420 0.77 +1.1
916,193 + A4249_RS04420 0.81 -0.4
916,193 + A4249_RS04420 0.81 -0.2
916,198 + A4249_RS04420 0.81 +0.4
916,198 + A4249_RS04420 0.81 +1.0
916,214 - A4249_RS04420 0.82 -1.4
916,286 + A4249_RS04420 0.86 -0.1
916,286 + A4249_RS04420 0.86 +0.5
916,286 + A4249_RS04420 0.86 -0.6
916,286 + A4249_RS04420 0.86 -0.5
916,286 + A4249_RS04420 0.86 -2.5
916,286 + A4249_RS04420 0.86 -0.5
916,286 + A4249_RS04420 0.86 -0.0
916,286 + A4249_RS04420 0.86 -0.9
916,287 - A4249_RS04420 0.87 +0.7
916,287 - A4249_RS04420 0.87 +0.1
916,288 + A4249_RS04420 0.87 +1.0
916,288 + A4249_RS04420 0.87 +0.2
916,288 + A4249_RS04420 0.87 -0.6
916,288 + A4249_RS04420 0.87 -0.6
916,288 + A4249_RS04420 0.87 -0.9
916,288 + A4249_RS04420 0.87 -0.3
916,288 + A4249_RS04420 0.87 -0.2
916,288 + A4249_RS04420 0.87 +0.6
916,288 + A4249_RS04420 0.87 -0.7
916,288 + A4249_RS04420 0.87 -1.5
916,288 + A4249_RS04420 0.87 -0.6
916,289 - A4249_RS04420 0.87 -0.3
916,289 - A4249_RS04420 0.87 +0.8
916,289 - A4249_RS04420 0.87 +0.5
916,289 - A4249_RS04420 0.87 +0.8
916,289 - A4249_RS04420 0.87 +0.1
916,289 - A4249_RS04420 0.87 -2.0
916,289 - A4249_RS04420 0.87 +0.4
916,289 - A4249_RS04420 0.87 +1.0
916,289 - A4249_RS04420 0.87 -1.6
916,289 - A4249_RS04420 0.87 -0.7
916,289 - A4249_RS04420 0.87 +0.4
916,289 - A4249_RS04420 0.87 -0.8
916,289 - A4249_RS04420 0.87 -0.6
916,289 - A4249_RS04420 0.87 +0.8
916,289 - A4249_RS04420 0.87 -1.5
916,289 - A4249_RS04420 0.87 -0.5
916,331 + A4249_RS04420 0.89 +0.2
916,332 - A4249_RS04420 0.89 -1.4
916,332 - A4249_RS04420 0.89 -0.3
916,443 + -0.2
916,444 - +0.8
916,444 - +0.1
916,444 - -0.6
916,611 + -0.9
916,612 - -0.9
916,612 - -1.5
916,638 - -0.2
916,659 - -2.0
916,659 - +0.6
916,720 - -0.2
916,797 - +0.2
916,881 + -0.4
916,882 - +1.9
916,919 + +0.7
916,919 + -0.8
916,931 + -1.0
916,932 - -2.0
916,932 - -2.0
917,141 + A4249_RS04425 0.20 -0.7
917,142 - A4249_RS04425 0.20 +0.2
917,142 - A4249_RS04425 0.20 +0.5
917,142 - A4249_RS04425 0.20 -1.3
917,142 - A4249_RS04425 0.20 -0.5
917,142 - A4249_RS04425 0.20 -0.4
917,142 - A4249_RS04425 0.20 -0.9
917,142 - A4249_RS04425 0.20 -0.4
917,142 - A4249_RS04425 0.20 +0.4
917,262 - A4249_RS04425 0.29 -1.2
917,262 - A4249_RS04425 0.29 +0.8

Or see this region's nucleotide sequence