Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS03880

Experiment: Inosine 0.3728 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS03875 and A4249_RS03880 overlap by 4 nucleotidesA4249_RS03880 and A4249_RS16735 are separated by 38 nucleotidesA4249_RS16735 and A4249_RS03885 are separated by 149 nucleotides A4249_RS03875: A4249_RS03875 - carboxylesterase family protein, at 815,262 to 816,857 _RS03875 A4249_RS03880: A4249_RS03880 - L,D-transpeptidase family protein, at 816,854 to 817,921 _RS03880 A4249_RS16735: A4249_RS16735 - hypothetical protein, at 817,960 to 818,121 _RS16735 A4249_RS03885: A4249_RS03885 - GNAT family N-acetyltransferase, at 818,271 to 819,431 _RS03885 Position (kb) 816 817 818Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 815.955 kb on + strand, within A4249_RS03875at 815.955 kb on + strand, within A4249_RS03875at 815.955 kb on + strand, within A4249_RS03875at 815.956 kb on - strand, within A4249_RS03875at 815.956 kb on - strand, within A4249_RS03875at 815.988 kb on + strand, within A4249_RS03875at 815.988 kb on + strand, within A4249_RS03875at 815.988 kb on + strand, within A4249_RS03875at 815.988 kb on + strand, within A4249_RS03875at 815.988 kb on + strand, within A4249_RS03875at 815.988 kb on + strand, within A4249_RS03875at 815.988 kb on + strand, within A4249_RS03875at 815.988 kb on + strand, within A4249_RS03875at 815.988 kb on + strand, within A4249_RS03875at 815.989 kb on - strand, within A4249_RS03875at 815.989 kb on - strand, within A4249_RS03875at 815.989 kb on - strand, within A4249_RS03875at 815.989 kb on - strand, within A4249_RS03875at 815.989 kb on - strand, within A4249_RS03875at 816.023 kb on - strand, within A4249_RS03875at 816.023 kb on - strand, within A4249_RS03875at 816.363 kb on + strand, within A4249_RS03875at 816.363 kb on + strand, within A4249_RS03875at 816.363 kb on + strand, within A4249_RS03875at 816.363 kb on + strand, within A4249_RS03875at 816.363 kb on + strand, within A4249_RS03875at 816.364 kb on - strand, within A4249_RS03875at 816.364 kb on - strand, within A4249_RS03875at 816.430 kb on + strand, within A4249_RS03875at 816.430 kb on + strand, within A4249_RS03875at 816.430 kb on + strand, within A4249_RS03875at 816.430 kb on + strand, within A4249_RS03875at 816.430 kb on + strand, within A4249_RS03875at 816.430 kb on + strand, within A4249_RS03875at 816.430 kb on + strand, within A4249_RS03875at 816.431 kb on - strand, within A4249_RS03875at 816.431 kb on - strand, within A4249_RS03875at 816.431 kb on - strand, within A4249_RS03875at 816.516 kb on + strand, within A4249_RS03875at 816.516 kb on + strand, within A4249_RS03875at 816.585 kb on + strand, within A4249_RS03875at 816.606 kb on + strand, within A4249_RS03875at 816.606 kb on + strand, within A4249_RS03875at 816.606 kb on + strand, within A4249_RS03875at 816.606 kb on + strand, within A4249_RS03875at 816.606 kb on + strand, within A4249_RS03875at 816.607 kb on - strand, within A4249_RS03875at 816.607 kb on - strand, within A4249_RS03875at 816.607 kb on - strand, within A4249_RS03875at 816.607 kb on - strand, within A4249_RS03875at 816.607 kb on - strand, within A4249_RS03875at 816.607 kb on - strand, within A4249_RS03875at 816.607 kb on - strand, within A4249_RS03875at 816.607 kb on - strand, within A4249_RS03875at 816.607 kb on - strand, within A4249_RS03875at 816.607 kb on - strand, within A4249_RS03875at 816.607 kb on - strand, within A4249_RS03875at 816.607 kb on - strand, within A4249_RS03875at 816.856 kb on - strandat 816.859 kb on + strandat 816.859 kb on + strandat 816.859 kb on + strandat 816.859 kb on + strandat 816.859 kb on + strandat 816.859 kb on + strandat 816.860 kb on - strandat 816.860 kb on - strandat 816.860 kb on - strandat 816.987 kb on + strand, within A4249_RS03880at 816.988 kb on - strand, within A4249_RS03880at 817.075 kb on - strand, within A4249_RS03880at 817.075 kb on - strand, within A4249_RS03880at 817.095 kb on + strand, within A4249_RS03880at 817.095 kb on + strand, within A4249_RS03880at 817.096 kb on - strand, within A4249_RS03880at 817.096 kb on - strand, within A4249_RS03880at 817.096 kb on - strand, within A4249_RS03880at 817.096 kb on - strand, within A4249_RS03880at 817.096 kb on - strand, within A4249_RS03880at 817.096 kb on - strand, within A4249_RS03880at 817.096 kb on - strand, within A4249_RS03880at 817.096 kb on - strand, within A4249_RS03880at 817.096 kb on - strand, within A4249_RS03880at 817.096 kb on - strand, within A4249_RS03880at 817.096 kb on - strand, within A4249_RS03880at 817.101 kb on + strand, within A4249_RS03880at 817.101 kb on + strand, within A4249_RS03880at 817.101 kb on + strand, within A4249_RS03880at 817.101 kb on + strand, within A4249_RS03880at 817.101 kb on + strand, within A4249_RS03880at 817.102 kb on - strand, within A4249_RS03880at 817.102 kb on - strand, within A4249_RS03880at 817.102 kb on - strand, within A4249_RS03880at 817.102 kb on - strand, within A4249_RS03880at 817.102 kb on - strand, within A4249_RS03880at 817.393 kb on + strand, within A4249_RS03880at 817.401 kb on + strand, within A4249_RS03880at 817.402 kb on - strand, within A4249_RS03880at 817.458 kb on + strand, within A4249_RS03880at 817.459 kb on - strand, within A4249_RS03880at 817.459 kb on - strand, within A4249_RS03880at 817.459 kb on - strand, within A4249_RS03880at 817.491 kb on + strand, within A4249_RS03880at 817.491 kb on + strand, within A4249_RS03880at 817.491 kb on + strand, within A4249_RS03880at 817.491 kb on + strand, within A4249_RS03880at 817.491 kb on + strand, within A4249_RS03880at 817.491 kb on + strand, within A4249_RS03880at 817.491 kb on + strand, within A4249_RS03880at 817.492 kb on - strand, within A4249_RS03880at 817.492 kb on - strand, within A4249_RS03880at 817.492 kb on - strand, within A4249_RS03880at 817.492 kb on - strand, within A4249_RS03880at 817.492 kb on - strand, within A4249_RS03880at 817.492 kb on - strand, within A4249_RS03880at 817.761 kb on + strand, within A4249_RS03880at 817.761 kb on + strand, within A4249_RS03880at 817.761 kb on + strand, within A4249_RS03880at 817.762 kb on - strand, within A4249_RS03880at 817.762 kb on - strand, within A4249_RS03880at 817.762 kb on - strand, within A4249_RS03880at 817.762 kb on - strand, within A4249_RS03880at 817.906 kb on - strandat 817.913 kb on - strandat 817.921 kb on + strandat 817.921 kb on + strandat 817.922 kb on - strandat 817.922 kb on - strandat 818.215 kb on - strandat 818.215 kb on - strandat 818.250 kb on + strandat 818.250 kb on + strandat 818.251 kb on - strandat 818.251 kb on - strandat 818.270 kb on + strandat 818.271 kb on - strandat 818.271 kb on - strandat 818.271 kb on - strandat 818.379 kb on + strandat 818.379 kb on + strandat 818.379 kb on + strandat 818.394 kb on + strand, within A4249_RS03885at 818.395 kb on - strand, within A4249_RS03885at 818.530 kb on - strand, within A4249_RS03885at 818.530 kb on - strand, within A4249_RS03885at 818.685 kb on + strand, within A4249_RS03885at 818.686 kb on - strand, within A4249_RS03885at 818.727 kb on + strand, within A4249_RS03885at 818.728 kb on - strand, within A4249_RS03885at 818.728 kb on - strand, within A4249_RS03885

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine 0.3728 mM (C)
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815,955 + A4249_RS03875 0.43 -0.6
815,955 + A4249_RS03875 0.43 +0.5
815,955 + A4249_RS03875 0.43 +0.8
815,956 - A4249_RS03875 0.43 +0.2
815,956 - A4249_RS03875 0.43 -0.1
815,988 + A4249_RS03875 0.45 +0.2
815,988 + A4249_RS03875 0.45 -0.7
815,988 + A4249_RS03875 0.45 +0.4
815,988 + A4249_RS03875 0.45 -0.7
815,988 + A4249_RS03875 0.45 -0.4
815,988 + A4249_RS03875 0.45 -0.8
815,988 + A4249_RS03875 0.45 -0.3
815,988 + A4249_RS03875 0.45 -0.1
815,988 + A4249_RS03875 0.45 -0.0
815,989 - A4249_RS03875 0.46 -0.1
815,989 - A4249_RS03875 0.46 -0.1
815,989 - A4249_RS03875 0.46 +0.0
815,989 - A4249_RS03875 0.46 -0.2
815,989 - A4249_RS03875 0.46 +0.4
816,023 - A4249_RS03875 0.48 +2.0
816,023 - A4249_RS03875 0.48 -1.0
816,363 + A4249_RS03875 0.69 +0.3
816,363 + A4249_RS03875 0.69 +1.0
816,363 + A4249_RS03875 0.69 +0.6
816,363 + A4249_RS03875 0.69 -1.4
816,363 + A4249_RS03875 0.69 +0.0
816,364 - A4249_RS03875 0.69 +0.2
816,364 - A4249_RS03875 0.69 -0.8
816,430 + A4249_RS03875 0.73 +0.9
816,430 + A4249_RS03875 0.73 +1.1
816,430 + A4249_RS03875 0.73 +0.7
816,430 + A4249_RS03875 0.73 -0.3
816,430 + A4249_RS03875 0.73 -0.7
816,430 + A4249_RS03875 0.73 -0.3
816,430 + A4249_RS03875 0.73 +0.2
816,431 - A4249_RS03875 0.73 +2.0
816,431 - A4249_RS03875 0.73 +0.3
816,431 - A4249_RS03875 0.73 +0.4
816,516 + A4249_RS03875 0.79 -0.6
816,516 + A4249_RS03875 0.79 +2.0
816,585 + A4249_RS03875 0.83 -0.8
816,606 + A4249_RS03875 0.84 +0.3
816,606 + A4249_RS03875 0.84 +1.3
816,606 + A4249_RS03875 0.84 -0.1
816,606 + A4249_RS03875 0.84 +0.9
816,606 + A4249_RS03875 0.84 +0.6
816,607 - A4249_RS03875 0.84 +1.6
816,607 - A4249_RS03875 0.84 -0.8
816,607 - A4249_RS03875 0.84 -0.1
816,607 - A4249_RS03875 0.84 -0.6
816,607 - A4249_RS03875 0.84 +0.0
816,607 - A4249_RS03875 0.84 +1.8
816,607 - A4249_RS03875 0.84 +0.6
816,607 - A4249_RS03875 0.84 +0.3
816,607 - A4249_RS03875 0.84 +1.6
816,607 - A4249_RS03875 0.84 -0.7
816,607 - A4249_RS03875 0.84 +0.7
816,607 - A4249_RS03875 0.84 -0.5
816,856 - +0.7
816,859 + +0.5
816,859 + -0.0
816,859 + -0.1
816,859 + -1.4
816,859 + -0.3
816,859 + -0.5
816,860 - -0.9
816,860 - +0.2
816,860 - +0.3
816,987 + A4249_RS03880 0.12 -0.2
816,988 - A4249_RS03880 0.13 +0.9
817,075 - A4249_RS03880 0.21 -0.7
817,075 - A4249_RS03880 0.21 +0.0
817,095 + A4249_RS03880 0.23 -0.2
817,095 + A4249_RS03880 0.23 -1.3
817,096 - A4249_RS03880 0.23 +0.1
817,096 - A4249_RS03880 0.23 +1.0
817,096 - A4249_RS03880 0.23 -0.3
817,096 - A4249_RS03880 0.23 -0.4
817,096 - A4249_RS03880 0.23 +0.2
817,096 - A4249_RS03880 0.23 -0.3
817,096 - A4249_RS03880 0.23 -0.3
817,096 - A4249_RS03880 0.23 -0.2
817,096 - A4249_RS03880 0.23 +0.0
817,096 - A4249_RS03880 0.23 -0.6
817,096 - A4249_RS03880 0.23 +1.2
817,101 + A4249_RS03880 0.23 -0.7
817,101 + A4249_RS03880 0.23 -0.6
817,101 + A4249_RS03880 0.23 +0.1
817,101 + A4249_RS03880 0.23 -0.9
817,101 + A4249_RS03880 0.23 +0.6
817,102 - A4249_RS03880 0.23 -1.1
817,102 - A4249_RS03880 0.23 +0.0
817,102 - A4249_RS03880 0.23 -0.7
817,102 - A4249_RS03880 0.23 -0.3
817,102 - A4249_RS03880 0.23 -0.9
817,393 + A4249_RS03880 0.50 +1.0
817,401 + A4249_RS03880 0.51 +0.2
817,402 - A4249_RS03880 0.51 +0.1
817,458 + A4249_RS03880 0.57 +0.3
817,459 - A4249_RS03880 0.57 +0.9
817,459 - A4249_RS03880 0.57 -0.4
817,459 - A4249_RS03880 0.57 +0.3
817,491 + A4249_RS03880 0.60 +0.6
817,491 + A4249_RS03880 0.60 +0.8
817,491 + A4249_RS03880 0.60 -0.5
817,491 + A4249_RS03880 0.60 -0.8
817,491 + A4249_RS03880 0.60 +1.1
817,491 + A4249_RS03880 0.60 -0.3
817,491 + A4249_RS03880 0.60 -1.1
817,492 - A4249_RS03880 0.60 +0.1
817,492 - A4249_RS03880 0.60 +0.7
817,492 - A4249_RS03880 0.60 -0.9
817,492 - A4249_RS03880 0.60 +0.3
817,492 - A4249_RS03880 0.60 -0.2
817,492 - A4249_RS03880 0.60 +0.3
817,761 + A4249_RS03880 0.85 +0.8
817,761 + A4249_RS03880 0.85 +0.4
817,761 + A4249_RS03880 0.85 +0.7
817,762 - A4249_RS03880 0.85 -0.4
817,762 - A4249_RS03880 0.85 +0.7
817,762 - A4249_RS03880 0.85 +0.4
817,762 - A4249_RS03880 0.85 -0.2
817,906 - +0.5
817,913 - -0.3
817,921 + -2.4
817,921 + -0.3
817,922 - +0.3
817,922 - -1.7
818,215 - +0.3
818,215 - -2.8
818,250 + +0.5
818,250 + -0.8
818,251 - -0.2
818,251 - -0.8
818,270 + -0.8
818,271 - +0.5
818,271 - -0.2
818,271 - +1.7
818,379 + -0.9
818,379 + -0.3
818,379 + +0.0
818,394 + A4249_RS03885 0.11 -0.2
818,395 - A4249_RS03885 0.11 -0.2
818,530 - A4249_RS03885 0.22 +0.0
818,530 - A4249_RS03885 0.22 +1.3
818,685 + A4249_RS03885 0.36 +0.7
818,686 - A4249_RS03885 0.36 +1.1
818,727 + A4249_RS03885 0.39 +0.8
818,728 - A4249_RS03885 0.39 +0.0
818,728 - A4249_RS03885 0.39 +1.1

Or see this region's nucleotide sequence