Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS00930

Experiment: Inosine 0.3728 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS00920 and A4249_RS00925 are separated by 162 nucleotidesA4249_RS00925 and A4249_RS00930 are separated by 22 nucleotidesA4249_RS00930 and A4249_RS17015 are separated by 35 nucleotidesA4249_RS17015 and A4249_RS00935 are separated by 4 nucleotides A4249_RS00920: A4249_RS00920 - adenylosuccinate lyase, at 168,846 to 170,147 _RS00920 A4249_RS00925: A4249_RS00925 - multidrug efflux SMR transporter, at 170,310 to 170,630 _RS00925 A4249_RS00930: A4249_RS00930 - glutathione S-transferase family protein, at 170,653 to 171,321 _RS00930 A4249_RS17015: A4249_RS17015 - hypothetical protein, at 171,357 to 171,488 _RS17015 A4249_RS00935: A4249_RS00935 - lytic transglycosylase domain-containing protein, at 171,493 to 173,178 _RS00935 Position (kb) 170 171 172Strain fitness (log2 ratio) -2 -1 0 1at 170.320 kb on + strandat 170.321 kb on - strandat 170.321 kb on - strandat 170.485 kb on - strand, within A4249_RS00925at 170.485 kb on - strand, within A4249_RS00925at 170.680 kb on + strandat 170.680 kb on + strandat 170.681 kb on - strandat 170.681 kb on - strandat 171.092 kb on + strand, within A4249_RS00930at 171.092 kb on + strand, within A4249_RS00930at 171.093 kb on - strand, within A4249_RS00930at 171.093 kb on - strand, within A4249_RS00930at 171.093 kb on - strand, within A4249_RS00930at 171.093 kb on - strand, within A4249_RS00930at 171.121 kb on + strand, within A4249_RS00930at 171.121 kb on + strand, within A4249_RS00930at 171.121 kb on + strand, within A4249_RS00930at 171.121 kb on + strand, within A4249_RS00930at 171.121 kb on + strand, within A4249_RS00930at 171.121 kb on + strand, within A4249_RS00930at 171.122 kb on - strand, within A4249_RS00930at 171.122 kb on - strand, within A4249_RS00930at 171.236 kb on - strand, within A4249_RS00930at 171.236 kb on - strand, within A4249_RS00930at 171.236 kb on - strand, within A4249_RS00930at 171.248 kb on + strand, within A4249_RS00930at 171.248 kb on + strand, within A4249_RS00930at 171.248 kb on + strand, within A4249_RS00930at 171.248 kb on + strand, within A4249_RS00930at 171.249 kb on - strand, within A4249_RS00930at 171.249 kb on - strand, within A4249_RS00930at 171.249 kb on - strand, within A4249_RS00930at 171.249 kb on - strand, within A4249_RS00930at 171.249 kb on - strand, within A4249_RS00930at 171.330 kb on + strandat 171.330 kb on + strandat 171.330 kb on + strandat 171.331 kb on - strandat 171.344 kb on + strandat 171.344 kb on + strandat 171.344 kb on + strandat 171.427 kb on - strand, within A4249_RS17015at 171.486 kb on + strandat 171.487 kb on - strandat 171.487 kb on - strandat 171.564 kb on - strandat 171.564 kb on - strandat 171.564 kb on - strandat 171.564 kb on - strandat 171.564 kb on - strandat 171.644 kb on + strandat 171.644 kb on + strandat 171.644 kb on + strandat 171.644 kb on + strandat 171.644 kb on + strandat 171.644 kb on + strandat 171.644 kb on + strandat 171.645 kb on - strandat 171.645 kb on - strandat 171.645 kb on - strandat 171.645 kb on - strandat 171.645 kb on - strandat 171.645 kb on - strandat 171.645 kb on - strandat 171.645 kb on - strandat 171.645 kb on - strandat 171.645 kb on - strandat 171.645 kb on - strandat 171.653 kb on + strandat 171.654 kb on - strandat 171.654 kb on - strandat 171.654 kb on - strandat 171.677 kb on + strand, within A4249_RS00935at 171.677 kb on + strand, within A4249_RS00935at 171.678 kb on - strand, within A4249_RS00935at 171.678 kb on - strand, within A4249_RS00935at 171.678 kb on - strand, within A4249_RS00935at 171.678 kb on - strand, within A4249_RS00935at 171.678 kb on - strand, within A4249_RS00935at 171.782 kb on + strand, within A4249_RS00935at 171.782 kb on + strand, within A4249_RS00935at 171.782 kb on + strand, within A4249_RS00935at 171.782 kb on + strand, within A4249_RS00935at 171.782 kb on + strand, within A4249_RS00935at 171.782 kb on + strand, within A4249_RS00935at 171.783 kb on - strand, within A4249_RS00935at 171.783 kb on - strand, within A4249_RS00935at 171.783 kb on - strand, within A4249_RS00935at 171.783 kb on - strand, within A4249_RS00935at 171.845 kb on + strand, within A4249_RS00935at 171.845 kb on + strand, within A4249_RS00935at 171.845 kb on + strand, within A4249_RS00935at 171.845 kb on + strand, within A4249_RS00935at 171.845 kb on + strand, within A4249_RS00935at 171.845 kb on + strand, within A4249_RS00935at 171.845 kb on + strand, within A4249_RS00935at 171.845 kb on + strand, within A4249_RS00935at 171.845 kb on + strand, within A4249_RS00935at 171.845 kb on + strand, within A4249_RS00935at 171.846 kb on - strand, within A4249_RS00935at 171.846 kb on - strand, within A4249_RS00935at 171.846 kb on - strand, within A4249_RS00935at 171.846 kb on - strand, within A4249_RS00935at 171.846 kb on - strand, within A4249_RS00935at 171.846 kb on - strand, within A4249_RS00935at 171.846 kb on - strand, within A4249_RS00935at 171.846 kb on - strand, within A4249_RS00935at 171.962 kb on + strand, within A4249_RS00935at 171.963 kb on - strand, within A4249_RS00935at 172.022 kb on + strand, within A4249_RS00935at 172.022 kb on + strand, within A4249_RS00935at 172.022 kb on + strand, within A4249_RS00935at 172.022 kb on + strand, within A4249_RS00935at 172.022 kb on + strand, within A4249_RS00935at 172.023 kb on - strand, within A4249_RS00935at 172.023 kb on - strand, within A4249_RS00935at 172.023 kb on - strand, within A4249_RS00935at 172.023 kb on - strand, within A4249_RS00935at 172.023 kb on - strand, within A4249_RS00935at 172.023 kb on - strand, within A4249_RS00935at 172.079 kb on + strand, within A4249_RS00935at 172.229 kb on + strand, within A4249_RS00935at 172.229 kb on + strand, within A4249_RS00935at 172.229 kb on + strand, within A4249_RS00935at 172.229 kb on + strand, within A4249_RS00935at 172.229 kb on + strand, within A4249_RS00935at 172.229 kb on + strand, within A4249_RS00935at 172.229 kb on + strand, within A4249_RS00935at 172.229 kb on + strand, within A4249_RS00935at 172.230 kb on - strand, within A4249_RS00935at 172.230 kb on - strand, within A4249_RS00935at 172.230 kb on - strand, within A4249_RS00935at 172.230 kb on - strand, within A4249_RS00935at 172.230 kb on - strand, within A4249_RS00935at 172.230 kb on - strand, within A4249_RS00935at 172.316 kb on + strand, within A4249_RS00935at 172.316 kb on + strand, within A4249_RS00935at 172.316 kb on + strand, within A4249_RS00935at 172.316 kb on + strand, within A4249_RS00935at 172.316 kb on + strand, within A4249_RS00935at 172.316 kb on + strand, within A4249_RS00935at 172.316 kb on + strand, within A4249_RS00935at 172.316 kb on + strand, within A4249_RS00935at 172.316 kb on + strand, within A4249_RS00935at 172.316 kb on + strand, within A4249_RS00935at 172.316 kb on + strand, within A4249_RS00935at 172.317 kb on - strand, within A4249_RS00935at 172.317 kb on - strand, within A4249_RS00935at 172.317 kb on - strand, within A4249_RS00935at 172.317 kb on - strand, within A4249_RS00935at 172.317 kb on - strand, within A4249_RS00935at 172.317 kb on - strand, within A4249_RS00935at 172.317 kb on - strand, within A4249_RS00935

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Inosine 0.3728 mM (C)
remove
170,320 + -0.8
170,321 - +1.7
170,321 - +1.6
170,485 - A4249_RS00925 0.55 +0.7
170,485 - A4249_RS00925 0.55 -2.5
170,680 + -0.5
170,680 + -0.1
170,681 - -0.3
170,681 - +0.5
171,092 + A4249_RS00930 0.66 -0.7
171,092 + A4249_RS00930 0.66 +0.1
171,093 - A4249_RS00930 0.66 -0.3
171,093 - A4249_RS00930 0.66 -1.2
171,093 - A4249_RS00930 0.66 -0.1
171,093 - A4249_RS00930 0.66 +0.2
171,121 + A4249_RS00930 0.70 -1.5
171,121 + A4249_RS00930 0.70 +0.4
171,121 + A4249_RS00930 0.70 -0.0
171,121 + A4249_RS00930 0.70 +0.2
171,121 + A4249_RS00930 0.70 -0.8
171,121 + A4249_RS00930 0.70 -0.9
171,122 - A4249_RS00930 0.70 -0.0
171,122 - A4249_RS00930 0.70 -0.6
171,236 - A4249_RS00930 0.87 -1.4
171,236 - A4249_RS00930 0.87 -0.0
171,236 - A4249_RS00930 0.87 +0.9
171,248 + A4249_RS00930 0.89 +0.9
171,248 + A4249_RS00930 0.89 -0.6
171,248 + A4249_RS00930 0.89 -0.2
171,248 + A4249_RS00930 0.89 -1.0
171,249 - A4249_RS00930 0.89 -1.9
171,249 - A4249_RS00930 0.89 +0.7
171,249 - A4249_RS00930 0.89 -0.9
171,249 - A4249_RS00930 0.89 +0.2
171,249 - A4249_RS00930 0.89 -0.2
171,330 + -0.7
171,330 + -0.1
171,330 + -0.1
171,331 - -0.8
171,344 + -0.7
171,344 + -0.6
171,344 + -0.8
171,427 - A4249_RS17015 0.53 +0.2
171,486 + +0.7
171,487 - -0.8
171,487 - -1.5
171,564 - -0.7
171,564 - -1.0
171,564 - +0.7
171,564 - -0.3
171,564 - -1.1
171,644 + +0.5
171,644 + -1.1
171,644 + -0.3
171,644 + -0.0
171,644 + -0.1
171,644 + -0.6
171,644 + -0.4
171,645 - -0.5
171,645 - -0.6
171,645 - -0.3
171,645 - -1.0
171,645 - -0.7
171,645 - -0.9
171,645 - -0.9
171,645 - -1.2
171,645 - -0.4
171,645 - -0.3
171,645 - -0.2
171,653 + -0.5
171,654 - +0.0
171,654 - -1.8
171,654 - -0.4
171,677 + A4249_RS00935 0.11 +0.6
171,677 + A4249_RS00935 0.11 -1.0
171,678 - A4249_RS00935 0.11 -0.8
171,678 - A4249_RS00935 0.11 +0.6
171,678 - A4249_RS00935 0.11 -0.8
171,678 - A4249_RS00935 0.11 +0.2
171,678 - A4249_RS00935 0.11 -0.5
171,782 + A4249_RS00935 0.17 +0.4
171,782 + A4249_RS00935 0.17 +0.9
171,782 + A4249_RS00935 0.17 +0.2
171,782 + A4249_RS00935 0.17 +0.1
171,782 + A4249_RS00935 0.17 -0.2
171,782 + A4249_RS00935 0.17 -1.8
171,783 - A4249_RS00935 0.17 -0.8
171,783 - A4249_RS00935 0.17 -0.9
171,783 - A4249_RS00935 0.17 +0.1
171,783 - A4249_RS00935 0.17 -1.0
171,845 + A4249_RS00935 0.21 -1.3
171,845 + A4249_RS00935 0.21 +0.4
171,845 + A4249_RS00935 0.21 -1.7
171,845 + A4249_RS00935 0.21 -1.8
171,845 + A4249_RS00935 0.21 -0.3
171,845 + A4249_RS00935 0.21 -0.5
171,845 + A4249_RS00935 0.21 -0.2
171,845 + A4249_RS00935 0.21 +0.6
171,845 + A4249_RS00935 0.21 +0.7
171,845 + A4249_RS00935 0.21 -1.5
171,846 - A4249_RS00935 0.21 -0.5
171,846 - A4249_RS00935 0.21 +0.3
171,846 - A4249_RS00935 0.21 -0.5
171,846 - A4249_RS00935 0.21 +0.1
171,846 - A4249_RS00935 0.21 -0.1
171,846 - A4249_RS00935 0.21 -0.1
171,846 - A4249_RS00935 0.21 +0.9
171,846 - A4249_RS00935 0.21 -0.6
171,962 + A4249_RS00935 0.28 -0.6
171,963 - A4249_RS00935 0.28 -0.9
172,022 + A4249_RS00935 0.31 -0.4
172,022 + A4249_RS00935 0.31 -0.7
172,022 + A4249_RS00935 0.31 +0.7
172,022 + A4249_RS00935 0.31 -0.1
172,022 + A4249_RS00935 0.31 -0.5
172,023 - A4249_RS00935 0.31 -0.8
172,023 - A4249_RS00935 0.31 -1.4
172,023 - A4249_RS00935 0.31 -0.4
172,023 - A4249_RS00935 0.31 -1.3
172,023 - A4249_RS00935 0.31 -0.6
172,023 - A4249_RS00935 0.31 -0.2
172,079 + A4249_RS00935 0.35 +0.5
172,229 + A4249_RS00935 0.44 -0.3
172,229 + A4249_RS00935 0.44 -0.8
172,229 + A4249_RS00935 0.44 -0.2
172,229 + A4249_RS00935 0.44 -0.4
172,229 + A4249_RS00935 0.44 +0.2
172,229 + A4249_RS00935 0.44 -0.0
172,229 + A4249_RS00935 0.44 -1.1
172,229 + A4249_RS00935 0.44 +1.0
172,230 - A4249_RS00935 0.44 -0.9
172,230 - A4249_RS00935 0.44 -0.4
172,230 - A4249_RS00935 0.44 -0.5
172,230 - A4249_RS00935 0.44 -1.0
172,230 - A4249_RS00935 0.44 -0.2
172,230 - A4249_RS00935 0.44 -0.8
172,316 + A4249_RS00935 0.49 -0.3
172,316 + A4249_RS00935 0.49 -0.4
172,316 + A4249_RS00935 0.49 -0.3
172,316 + A4249_RS00935 0.49 +0.1
172,316 + A4249_RS00935 0.49 -0.2
172,316 + A4249_RS00935 0.49 -0.1
172,316 + A4249_RS00935 0.49 +0.4
172,316 + A4249_RS00935 0.49 -2.5
172,316 + A4249_RS00935 0.49 -0.5
172,316 + A4249_RS00935 0.49 -0.2
172,316 + A4249_RS00935 0.49 -1.1
172,317 - A4249_RS00935 0.49 -0.3
172,317 - A4249_RS00935 0.49 +0.3
172,317 - A4249_RS00935 0.49 +0.0
172,317 - A4249_RS00935 0.49 -1.4
172,317 - A4249_RS00935 0.49 -0.6
172,317 - A4249_RS00935 0.49 -0.7
172,317 - A4249_RS00935 0.49 -0.2

Or see this region's nucleotide sequence