Experiment: WM_JK32
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt wzc and wcaA are separated by 92 nucleotides wcaA and wcaB are separated by 2 nucleotides wcaB and wcaC overlap by 4 nucleotides
JDDGAC_28420: wzc - tyrosine-protein kinase Wzc, at 5,448,209 to 5,450,371
wzc
JDDGAC_28425: wcaA - colanic acid biosynthesis glycosyltransferase WcaA, at 5,450,464 to 5,451,303
wcaA
JDDGAC_28430: wcaB - colanic acid biosynthesis acetyltransferase WcaB, at 5,451,306 to 5,451,794
wcaB
JDDGAC_28435: wcaC - colanic acid biosynthesis glycosyltransferase WcaC, at 5,451,791 to 5,453,008
wcaC
Position (kb) 5451
5452 Strain fitness (log2 ratio) -2
-1
0
1 at 5450.331 kb on - strand at 5450.339 kb on + strand at 5450.340 kb on - strand at 5450.352 kb on - strand at 5450.353 kb on + strand at 5450.457 kb on - strand at 5450.464 kb on - strand at 5450.557 kb on + strand, within wcaA at 5450.649 kb on + strand, within wcaA at 5450.649 kb on + strand, within wcaA at 5450.649 kb on + strand, within wcaA at 5450.653 kb on + strand, within wcaA at 5450.654 kb on - strand, within wcaA at 5450.695 kb on - strand, within wcaA at 5450.725 kb on + strand, within wcaA at 5450.726 kb on - strand, within wcaA at 5450.834 kb on - strand, within wcaA at 5450.873 kb on + strand, within wcaA at 5450.873 kb on + strand, within wcaA at 5450.874 kb on - strand, within wcaA at 5450.926 kb on - strand, within wcaA at 5450.926 kb on - strand, within wcaA at 5451.007 kb on + strand, within wcaA at 5451.133 kb on + strand, within wcaA at 5451.133 kb on + strand, within wcaA at 5451.134 kb on - strand, within wcaA at 5451.306 kb on - strand at 5451.516 kb on - strand, within wcaB at 5451.548 kb on + strand, within wcaB at 5451.549 kb on - strand, within wcaB at 5451.808 kb on + strand at 5451.964 kb on + strand, within wcaC at 5451.991 kb on + strand, within wcaC at 5452.045 kb on - strand, within wcaC at 5452.047 kb on - strand, within wcaC at 5452.114 kb on - strand, within wcaC at 5452.279 kb on + strand, within wcaC at 5452.279 kb on + strand, within wcaC at 5452.279 kb on + strand, within wcaC at 5452.280 kb on - strand, within wcaC at 5452.280 kb on - strand, within wcaC at 5452.283 kb on + strand, within wcaC at 5452.438 kb on + strand, within wcaC at 5452.444 kb on + strand, within wcaC at 5452.562 kb on - strand, within wcaC at 5452.616 kb on - strand, within wcaC at 5452.616 kb on - strand, within wcaC at 5452.616 kb on - strand, within wcaC at 5452.658 kb on - strand, within wcaC
Per-strain Table
Position Strand Gene LocusTag Fraction WM_JK32 remove 5,450,331 - +0.5 5,450,339 + +0.1 5,450,340 - -0.0 5,450,352 - +0.8 5,450,353 + +0.4 5,450,457 - -0.1 5,450,464 - -0.3 5,450,557 + wcaA JDDGAC_28425 0.11 +1.7 5,450,649 + wcaA JDDGAC_28425 0.22 +0.1 5,450,649 + wcaA JDDGAC_28425 0.22 -0.3 5,450,649 + wcaA JDDGAC_28425 0.22 -1.0 5,450,653 + wcaA JDDGAC_28425 0.23 -2.2 5,450,654 - wcaA JDDGAC_28425 0.23 -0.2 5,450,695 - wcaA JDDGAC_28425 0.28 +0.4 5,450,725 + wcaA JDDGAC_28425 0.31 +0.2 5,450,726 - wcaA JDDGAC_28425 0.31 +0.2 5,450,834 - wcaA JDDGAC_28425 0.44 -1.5 5,450,873 + wcaA JDDGAC_28425 0.49 -0.3 5,450,873 + wcaA JDDGAC_28425 0.49 +0.3 5,450,874 - wcaA JDDGAC_28425 0.49 -0.1 5,450,926 - wcaA JDDGAC_28425 0.55 +0.1 5,450,926 - wcaA JDDGAC_28425 0.55 +0.4 5,451,007 + wcaA JDDGAC_28425 0.65 +0.3 5,451,133 + wcaA JDDGAC_28425 0.80 -0.8 5,451,133 + wcaA JDDGAC_28425 0.80 +0.6 5,451,134 - wcaA JDDGAC_28425 0.80 +0.5 5,451,306 - +0.4 5,451,516 - wcaB JDDGAC_28430 0.43 -0.4 5,451,548 + wcaB JDDGAC_28430 0.49 -0.7 5,451,549 - wcaB JDDGAC_28430 0.50 +0.4 5,451,808 + -1.7 5,451,964 + wcaC JDDGAC_28435 0.14 +1.2 5,451,991 + wcaC JDDGAC_28435 0.16 -0.6 5,452,045 - wcaC JDDGAC_28435 0.21 +0.4 5,452,047 - wcaC JDDGAC_28435 0.21 -0.5 5,452,114 - wcaC JDDGAC_28435 0.27 -0.5 5,452,279 + wcaC JDDGAC_28435 0.40 -0.1 5,452,279 + wcaC JDDGAC_28435 0.40 +0.3 5,452,279 + wcaC JDDGAC_28435 0.40 +0.0 5,452,280 - wcaC JDDGAC_28435 0.40 -1.5 5,452,280 - wcaC JDDGAC_28435 0.40 +0.1 5,452,283 + wcaC JDDGAC_28435 0.40 -0.3 5,452,438 + wcaC JDDGAC_28435 0.53 -0.5 5,452,444 + wcaC JDDGAC_28435 0.54 +0.3 5,452,562 - wcaC JDDGAC_28435 0.63 -0.7 5,452,616 - wcaC JDDGAC_28435 0.68 -0.4 5,452,616 - wcaC JDDGAC_28435 0.68 +0.5 5,452,616 - wcaC JDDGAC_28435 0.68 +0.3 5,452,658 - wcaC JDDGAC_28435 0.71 +0.5
Or see this region's nucleotide sequence