Strain Fitness in Escherichia coli ECRC98 around JDDGAC_24980

Experiment: WM_JK32

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpssA and pssL overlap by 17 nucleotidespssL and pat are separated by 88 nucleotides JDDGAC_24975: pssA - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 4,775,148 to 4,776,503 pssA JDDGAC_24980: pssL - Protein PssL, at 4,776,487 to 4,776,528 pssL JDDGAC_24985: pat - protein lysine acetyltransferase, at 4,776,617 to 4,779,277 pat Position (kb) 4776 4777Strain fitness (log2 ratio) -2 -1 0 1at 4776.571 kb on - strandat 4776.645 kb on - strandat 4776.645 kb on - strandat 4776.650 kb on - strandat 4776.688 kb on + strandat 4776.739 kb on + strandat 4776.759 kb on - strandat 4776.777 kb on + strandat 4776.777 kb on + strandat 4776.778 kb on - strandat 4776.778 kb on - strandat 4776.782 kb on - strandat 4776.866 kb on - strandat 4777.255 kb on + strand, within patat 4777.396 kb on - strand, within pat

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_JK32
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4,776,571 - -2.1
4,776,645 - +0.3
4,776,645 - -1.4
4,776,650 - -0.1
4,776,688 + +0.1
4,776,739 + +0.2
4,776,759 - -0.5
4,776,777 + +0.0
4,776,777 + -1.1
4,776,778 - -0.2
4,776,778 - +0.8
4,776,782 - -0.3
4,776,866 - -0.2
4,777,255 + pat JDDGAC_24985 0.24 -0.2
4,777,396 - pat JDDGAC_24985 0.29 -0.9

Or see this region's nucleotide sequence