Strain Fitness in Escherichia coli ECRC98 around JDDGAC_19400

Experiment: WM_JK32

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	WM_JK32
3,690,338	+	lldD	JDDGAC_19395	0.16	+0.1
3,690,388	-	lldD	JDDGAC_19395	0.20	+0.7
3,690,491	-	lldD	JDDGAC_19395	0.29	+0.4
3,690,491	-	lldD	JDDGAC_19395	0.29	-0.2
3,690,491	-	lldD	JDDGAC_19395	0.29	+0.2
3,690,491	-	lldD	JDDGAC_19395	0.29	-0.3
3,690,527	-	lldD	JDDGAC_19395	0.32	-0.6
3,690,550	+	lldD	JDDGAC_19395	0.34	-1.8
3,690,550	+	lldD	JDDGAC_19395	0.34	-0.6
3,690,681	-	lldD	JDDGAC_19395	0.45	-0.7
3,690,681	-	lldD	JDDGAC_19395	0.45	+0.6
3,690,710	+	lldD	JDDGAC_19395	0.47	+0.2
3,690,720	+	lldD	JDDGAC_19395	0.48	+0.6
3,690,721	-	lldD	JDDGAC_19395	0.48	-0.9
3,690,721	-	lldD	JDDGAC_19395	0.48	-1.1
3,690,727	+	lldD	JDDGAC_19395	0.49	+0.3
3,690,794	+	lldD	JDDGAC_19395	0.54	-0.5
3,690,931	-	lldD	JDDGAC_19395	0.66	+0.0
3,690,949	+	lldD	JDDGAC_19395	0.67	+0.4
3,690,950	-	lldD	JDDGAC_19395	0.67	+0.3
3,690,950	-	lldD	JDDGAC_19395	0.67	-2.3
3,690,950	-	lldD	JDDGAC_19395	0.67	+0.5
3,690,950	-	lldD	JDDGAC_19395	0.67	-0.2
3,690,953	+	lldD	JDDGAC_19395	0.68	-1.2
3,690,953	+	lldD	JDDGAC_19395	0.68	-2.3
3,690,953	+	lldD	JDDGAC_19395	0.68	+0.4
3,690,953	+	lldD	JDDGAC_19395	0.68	+0.3
3,690,954	-	lldD	JDDGAC_19395	0.68	-0.8
3,690,954	-	lldD	JDDGAC_19395	0.68	+1.0
3,691,030	-	lldD	JDDGAC_19395	0.74	-0.0
3,691,088	+	lldD	JDDGAC_19395	0.79	+0.1
3,691,088	+	lldD	JDDGAC_19395	0.79	-1.1
3,691,088	+	lldD	JDDGAC_19395	0.79	-0.0
3,691,089	-	lldD	JDDGAC_19395	0.79	+0.8
3,691,089	-	lldD	JDDGAC_19395	0.79	+0.2
3,691,089	-	lldD	JDDGAC_19395	0.79	+1.1
3,691,165	+	lldD	JDDGAC_19395	0.85	+0.0
3,691,166	-	lldD	JDDGAC_19395	0.85	+0.9
3,691,189	-	lldD	JDDGAC_19395	0.87	+0.3
3,691,242	-				+0.2
3,691,242	-				-0.8
3,691,250	+				+0.0
3,691,250	+				+1.3
3,691,266	+				+0.2
3,691,266	+				-1.4
3,691,266	+				+0.8
3,691,266	+				-0.0
3,691,266	+				-1.9
3,691,267	-				+1.0
3,691,267	-				-0.1
3,691,268	+				+0.0
3,691,268	+				-1.1
3,691,332	+				+0.6
3,691,332	+				+0.3
3,691,364	+				+0.2
3,691,364	+				-0.5
3,691,364	+				-0.8
3,691,365	-				+0.4
3,691,365	-				+0.6
3,691,445	+	lldR	JDDGAC_19400	0.14	+0.2
3,691,446	-	lldR	JDDGAC_19400	0.14	+0.6
3,691,446	-	lldR	JDDGAC_19400	0.14	-0.4
3,691,555	+	lldR	JDDGAC_19400	0.28	+0.1
3,691,556	-	lldR	JDDGAC_19400	0.28	+0.2
3,691,571	+	lldR	JDDGAC_19400	0.30	-0.2
3,691,571	+	lldR	JDDGAC_19400	0.30	-0.6
3,691,572	-	lldR	JDDGAC_19400	0.31	+0.6
3,691,634	+	lldR	JDDGAC_19400	0.38	+0.2
3,691,634	+	lldR	JDDGAC_19400	0.38	+0.3
3,691,634	+	lldR	JDDGAC_19400	0.38	-0.2
3,691,634	+	lldR	JDDGAC_19400	0.38	-0.0
3,691,635	-	lldR	JDDGAC_19400	0.39	+0.4
3,691,635	-	lldR	JDDGAC_19400	0.39	-1.3
3,691,635	-	lldR	JDDGAC_19400	0.39	-0.7
3,691,635	-	lldR	JDDGAC_19400	0.39	+1.0
3,691,704	+	lldR	JDDGAC_19400	0.47	+0.5
3,691,705	-	lldR	JDDGAC_19400	0.48	-0.3
3,691,812	-	lldR	JDDGAC_19400	0.61	-0.5
3,691,976	+	lldR	JDDGAC_19400	0.82	-0.9
3,692,130	-				+0.4
3,692,136	+				-0.2
3,692,136	+				-0.3
3,692,136	+				+0.5
3,692,137	-				+0.3
3,692,167	+				-0.3
3,692,167	+				-0.1
3,692,257	+				+0.2
3,692,257	+				-2.4
3,692,258	-				+0.7
3,692,258	-				+0.1
3,692,300	-	lldP	JDDGAC_19405	0.11	-1.0
3,692,377	+	lldP	JDDGAC_19405	0.16	+0.2
3,692,377	+	lldP	JDDGAC_19405	0.16	+0.5
3,692,506	+	lldP	JDDGAC_19405	0.24	+0.0
3,692,538	+	lldP	JDDGAC_19405	0.26	+0.6
3,692,538	+	lldP	JDDGAC_19405	0.26	-0.4
3,692,538	+	lldP	JDDGAC_19405	0.26	-0.2
3,692,539	-	lldP	JDDGAC_19405	0.26	-1.7
3,692,546	+	lldP	JDDGAC_19405	0.26	-1.6
3,692,674	+	lldP	JDDGAC_19405	0.34	-0.4
3,692,688	+	lldP	JDDGAC_19405	0.35	+0.3
3,692,688	+	lldP	JDDGAC_19405	0.35	-0.2
3,692,772	+	lldP	JDDGAC_19405	0.40	-0.1
3,692,773	-	lldP	JDDGAC_19405	0.40	-3.5
3,692,773	-	lldP	JDDGAC_19405	0.40	+0.0
3,692,803	+	lldP	JDDGAC_19405	0.42	-0.3
3,692,867	+	lldP	JDDGAC_19405	0.46	-0.3
3,692,867	+	lldP	JDDGAC_19405	0.46	+0.0
3,692,868	-	lldP	JDDGAC_19405	0.46	+0.0
3,692,868	-	lldP	JDDGAC_19405	0.46	+1.3
3,692,868	-	lldP	JDDGAC_19405	0.46	+0.1
3,692,908	+	lldP	JDDGAC_19405	0.48	-0.2
3,692,908	+	lldP	JDDGAC_19405	0.48	+1.5
3,692,909	-	lldP	JDDGAC_19405	0.48	+0.1
3,692,909	-	lldP	JDDGAC_19405	0.48	-0.8
3,693,010	+	lldP	JDDGAC_19405	0.54	+0.2
3,693,011	-	lldP	JDDGAC_19405	0.54	+0.0
3,693,011	-	lldP	JDDGAC_19405	0.54	-1.2
3,693,011	-	lldP	JDDGAC_19405	0.54	+0.9
3,693,046	+	lldP	JDDGAC_19405	0.56	-0.0
3,693,046	+	lldP	JDDGAC_19405	0.56	+0.3
3,693,047	-	lldP	JDDGAC_19405	0.57	-0.3
3,693,047	-	lldP	JDDGAC_19405	0.57	-0.4
3,693,047	-	lldP	JDDGAC_19405	0.57	+0.3
3,693,047	-	lldP	JDDGAC_19405	0.57	-0.3