Strain Fitness in Escherichia coli ECRC98 around JDDGAC_18905

Experiment: WM_JK32

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntler and escE are separated by 14 nucleotidesescE and cesAB are separated by 12 nucleotidescesAB and escK overlap by 4 nucleotidesescK and escL overlap by 14 nucleotidesescL and escR are separated by 4 nucleotides JDDGAC_18890: ler - transcription regulator Ler, at 3,597,834 to 3,598,205 ler JDDGAC_18895: escE - chaperone for EscF, at 3,598,220 to 3,598,438 escE JDDGAC_18900: cesAB - chaperone for EspA and EspB, at 3,598,451 to 3,598,765 cesAB JDDGAC_18905: escK - type III secretion system sorting platform component, at 3,598,762 to 3,599,361 escK JDDGAC_18910: escL - negative regulator EscL, stator protein, at 3,599,348 to 3,600,001 escL JDDGAC_18915: escR - Type III secretion systemminor export apparatus protein EscR, at 3,600,006 to 3,600,659 escR Position (kb) 3598 3599 3600Strain fitness (log2 ratio) -2 -1 0 1at 3597.871 kb on - strandat 3597.947 kb on - strand, within lerat 3597.947 kb on - strand, within lerat 3597.984 kb on - strand, within lerat 3598.479 kb on + strandat 3598.631 kb on + strand, within cesABat 3598.789 kb on - strandat 3598.806 kb on + strandat 3599.358 kb on - strandat 3599.720 kb on - strand, within escLat 3600.124 kb on + strand, within escRat 3600.230 kb on - strand, within escR

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_JK32
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3,597,871 - -0.7
3,597,947 - ler JDDGAC_18890 0.30 -0.5
3,597,947 - ler JDDGAC_18890 0.30 +0.1
3,597,984 - ler JDDGAC_18890 0.40 -1.9
3,598,479 + +0.6
3,598,631 + cesAB JDDGAC_18900 0.57 +0.2
3,598,789 - -0.7
3,598,806 + +0.2
3,599,358 - -0.3
3,599,720 - escL JDDGAC_18910 0.57 -0.1
3,600,124 + escR JDDGAC_18915 0.18 -0.2
3,600,230 - escR JDDGAC_18915 0.34 -1.1

Or see this region's nucleotide sequence