Strain Fitness in Escherichia coli ECRC98 around JDDGAC_18175

Experiment: WM_JK32

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	WM_JK32
3,448,478	-	rffA	JDDGAC_18170	0.15	-2.1
3,448,518	-	rffA	JDDGAC_18170	0.19	-3.1
3,448,565	+	rffA	JDDGAC_18170	0.23	+0.5
3,448,565	+	rffA	JDDGAC_18170	0.23	-2.0
3,448,646	-	rffA	JDDGAC_18170	0.30	-4.2
3,448,683	-	rffA	JDDGAC_18170	0.33	-3.6
3,448,714	+	rffA	JDDGAC_18170	0.36	+0.4
3,448,766	+	rffA	JDDGAC_18170	0.40	-1.9
3,448,766	+	rffA	JDDGAC_18170	0.40	-0.1
3,448,768	+	rffA	JDDGAC_18170	0.41	-0.6
3,448,768	+	rffA	JDDGAC_18170	0.41	-1.8
3,448,768	+	rffA	JDDGAC_18170	0.41	-1.7
3,448,769	-	rffA	JDDGAC_18170	0.41	-3.9
3,448,769	-	rffA	JDDGAC_18170	0.41	-4.0
3,448,769	-	rffA	JDDGAC_18170	0.41	-4.5
3,448,914	-	rffA	JDDGAC_18170	0.54	-3.0
3,448,925	+	rffA	JDDGAC_18170	0.55	-1.8
3,448,925	+	rffA	JDDGAC_18170	0.55	-1.3
3,448,958	-	rffA	JDDGAC_18170	0.57	-3.2
3,448,958	-	rffA	JDDGAC_18170	0.57	-4.1
3,449,003	+	rffA	JDDGAC_18170	0.61	-3.5
3,449,203	+	rffA	JDDGAC_18170	0.79	-0.0
3,449,204	-	rffA	JDDGAC_18170	0.79	-1.2
3,449,390	+				-2.8
3,449,390	+				+1.1
3,449,390	+				-2.3
3,449,391	-				-4.3
3,449,391	-				-2.0
3,449,391	-				-3.7
3,449,392	+				-1.1
3,449,392	+				-2.0
3,449,393	-				-2.3
3,449,393	-				-2.2
3,449,426	+				-1.6
3,449,427	-				-2.0
3,449,450	+				-4.1
3,449,450	+				-2.0
3,449,450	+				-3.0
3,449,491	+				-3.3
3,449,491	+				-0.6
3,449,491	+				-1.0
3,449,491	+				-0.4
3,449,491	+				-1.9
3,449,491	+				-0.4
3,449,491	+				-2.4
3,449,492	-				-3.4
3,449,492	-				-4.5
3,449,492	-				-4.7
3,449,492	-				-3.4
3,449,492	-				-3.3
3,449,495	+				-1.7
3,449,495	+				-1.8
3,449,496	-				-4.2
3,449,496	-				-5.6
3,449,561	+	rffC	JDDGAC_18175	0.17	-2.2
3,449,637	+	rffC	JDDGAC_18175	0.29	-2.3
3,449,638	-	rffC	JDDGAC_18175	0.29	-1.7
3,449,692	+	rffC	JDDGAC_18175	0.37	-2.0
3,449,692	+	rffC	JDDGAC_18175	0.37	-2.7
3,449,693	-	rffC	JDDGAC_18175	0.37	-0.1
3,449,750	+	rffC	JDDGAC_18175	0.45	+0.8
3,449,778	-	rffC	JDDGAC_18175	0.50	+1.1
3,449,830	+	rffC	JDDGAC_18175	0.57	-2.3
3,449,831	-	rffC	JDDGAC_18175	0.57	-3.1
3,449,831	-	rffC	JDDGAC_18175	0.57	-2.5
3,449,918	-	rffC	JDDGAC_18175	0.70	-4.0
3,449,961	+	rffC	JDDGAC_18175	0.77	-3.6
3,450,039	+	rffC	JDDGAC_18175	0.88	-4.0
3,450,039	+	rffC	JDDGAC_18175	0.88	-5.1
3,450,039	+	rffC	JDDGAC_18175	0.88	-3.0
3,450,088	+				-1.7
3,450,100	-				-2.6
3,450,122	+				-4.6
3,450,266	+	rfbA	JDDGAC_18180	0.19	-1.7
3,450,367	-	rfbA	JDDGAC_18180	0.31	-5.8
3,450,367	-	rfbA	JDDGAC_18180	0.31	-2.3
3,450,430	-	rfbA	JDDGAC_18180	0.38	-5.0
3,450,456	+	rfbA	JDDGAC_18180	0.41	-2.6
3,450,457	-	rfbA	JDDGAC_18180	0.41	-6.3
3,450,457	-	rfbA	JDDGAC_18180	0.41	-4.3
3,450,457	-	rfbA	JDDGAC_18180	0.41	-3.0
3,450,515	-	rfbA	JDDGAC_18180	0.48	-3.1
3,450,707	-	rfbA	JDDGAC_18180	0.69	-3.8
3,450,798	+	rfbA	JDDGAC_18180	0.80	-2.4
3,450,805	+	rfbA	JDDGAC_18180	0.80	-2.7
3,450,806	-	rfbA	JDDGAC_18180	0.81	-6.4
3,450,806	-	rfbA	JDDGAC_18180	0.81	-1.5
3,450,873	+	rfbA	JDDGAC_18180	0.88	-2.7
3,450,873	+	rfbA	JDDGAC_18180	0.88	+0.3
3,450,873	+	rfbA	JDDGAC_18180	0.88	-1.9
3,450,873	+	rfbA	JDDGAC_18180	0.88	-3.1
3,450,873	+	rfbA	JDDGAC_18180	0.88	-2.2
3,450,874	-	rfbA	JDDGAC_18180	0.88	-4.3
3,450,887	-	rfbA	JDDGAC_18180	0.90	-4.9
3,450,891	+				-2.5
3,450,964	+				-3.1
3,450,967	+				-3.5
3,450,968	-				-1.2
3,450,968	-				-4.1
3,451,072	-				-2.0