Strain Fitness in Escherichia coli ECRC98 around JDDGAC_17125

Experiment: WM_JK32

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntmurB and 5S_rrna are separated by 136 nucleotides5S_rrna and 23S_rrna are separated by 94 nucleotides JDDGAC_17120: murB - UDP-N-acetylmuramate dehydrogenase, at 3,235,874 to 3,236,902 murB JDDGAC_17125: 5S_rrna - 5S ribosomal RNA, at 3,237,039 to 3,237,154 _rrna JDDGAC_17130: 23S_rrna - 23S ribosomal RNA, at 3,237,249 to 3,240,153 _rrna Position (kb) 3237 3238Strain fitness (log2 ratio) -1 0 1at 3236.932 kb on - strandat 3236.932 kb on - strandat 3236.932 kb on - strandat 3236.932 kb on - strandat 3236.937 kb on - strandat 3236.942 kb on - strandat 3236.963 kb on - strandat 3236.987 kb on + strandat 3236.987 kb on + strandat 3237.054 kb on - strand, within 5S_rrna

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction WM_JK32
remove
3,236,932 - +0.7
3,236,932 - -0.3
3,236,932 - -0.7
3,236,932 - +0.1
3,236,937 - -0.4
3,236,942 - -0.2
3,236,963 - +0.3
3,236,987 + -0.6
3,236,987 + -0.3
3,237,054 - 5S_rrna JDDGAC_17125 0.13 -0.5

Or see this region's nucleotide sequence