Strain Fitness in Escherichia coli ECRC98 around JDDGAC_14220

Experiment: WM_JK32

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntftsA and ftsQ overlap by 4 nucleotidesftsQ and ddlB are separated by 1 nucleotidesddlB and murC overlap by 8 nucleotides JDDGAC_14210: ftsA - cell division protein FtsA, at 2,636,140 to 2,637,402 ftsA JDDGAC_14215: ftsQ - cell division protein FtsQ, at 2,637,399 to 2,638,229 ftsQ JDDGAC_14220: ddlB - D-alanine--D-alanine ligase, at 2,638,231 to 2,639,151 ddlB JDDGAC_14225: murC - UDP-N-acetylmuramate--L-alanine ligase, at 2,639,144 to 2,640,619 murC Position (kb) 2638 2639 2640Strain fitness (log2 ratio) -3 -2 -1 0 1at 2637.469 kb on - strandat 2638.259 kb on - strandat 2638.279 kb on - strandat 2638.378 kb on - strand, within ddlBat 2638.409 kb on - strand, within ddlBat 2638.409 kb on - strand, within ddlBat 2638.485 kb on - strand, within ddlBat 2638.524 kb on - strand, within ddlBat 2638.546 kb on - strand, within ddlBat 2638.550 kb on - strand, within ddlBat 2638.652 kb on - strand, within ddlBat 2638.652 kb on - strand, within ddlBat 2638.793 kb on - strand, within ddlBat 2638.859 kb on - strand, within ddlBat 2638.859 kb on - strand, within ddlBat 2638.859 kb on - strand, within ddlBat 2638.859 kb on - strand, within ddlBat 2638.905 kb on - strand, within ddlBat 2638.905 kb on - strand, within ddlB

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_JK32
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2,637,469 - -1.3
2,638,259 - -0.5
2,638,279 - +0.5
2,638,378 - ddlB JDDGAC_14220 0.16 -0.9
2,638,409 - ddlB JDDGAC_14220 0.19 -0.5
2,638,409 - ddlB JDDGAC_14220 0.19 +0.3
2,638,485 - ddlB JDDGAC_14220 0.28 -0.2
2,638,524 - ddlB JDDGAC_14220 0.32 -0.3
2,638,546 - ddlB JDDGAC_14220 0.34 +0.9
2,638,550 - ddlB JDDGAC_14220 0.35 -0.6
2,638,652 - ddlB JDDGAC_14220 0.46 +0.9
2,638,652 - ddlB JDDGAC_14220 0.46 +0.3
2,638,793 - ddlB JDDGAC_14220 0.61 +1.3
2,638,859 - ddlB JDDGAC_14220 0.68 +0.4
2,638,859 - ddlB JDDGAC_14220 0.68 +0.2
2,638,859 - ddlB JDDGAC_14220 0.68 -0.4
2,638,859 - ddlB JDDGAC_14220 0.68 -0.3
2,638,905 - ddlB JDDGAC_14220 0.73 +0.1
2,638,905 - ddlB JDDGAC_14220 0.73 -3.5

Or see this region's nucleotide sequence