Strain Fitness in Escherichia coli ECRC98 around JDDGAC_10130

Experiment: WM_JK32

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_10115 and JDDGAC_10120 overlap by 1 nucleotidesJDDGAC_10120 and tnp-IS3 are separated by 207 nucleotidestnp-IS3 and tnp-IS3 overlap by 1 nucleotidestnp-IS3 and JDDGAC_10135 are separated by 39 nucleotides JDDGAC_10115: JDDGAC_10115 - phage tail protein, at 1,807,351 to 1,807,680 _10115 JDDGAC_10120: JDDGAC_10120 - phage tail tape measure protein, at 1,807,680 to 1,807,940 _10120 JDDGAC_10125: tnp-IS3 - IS3 family transposase, at 1,808,148 to 1,808,474 tnp-IS3 JDDGAC_10130: tnp-IS3 - IS3 family transposase, at 1,808,474 to 1,809,361 tnp-IS3 JDDGAC_10135: JDDGAC_10135 - phage tail tape measure protein, at 1,809,401 to 1,812,058 _10135 Position (kb) 1808 1809 1810Strain fitness (log2 ratio) -2 -1 0 1at 1807.507 kb on + strand, within JDDGAC_10115at 1807.508 kb on - strand, within JDDGAC_10115at 1807.528 kb on - strand, within JDDGAC_10115at 1807.550 kb on + strand, within JDDGAC_10115at 1807.647 kb on + strand, within JDDGAC_10115at 1807.731 kb on - strand, within JDDGAC_10120at 1807.731 kb on - strand, within JDDGAC_10120at 1807.731 kb on - strand, within JDDGAC_10120at 1807.789 kb on - strand, within JDDGAC_10120at 1807.828 kb on + strand, within JDDGAC_10120at 1807.828 kb on + strand, within JDDGAC_10120at 1807.866 kb on - strand, within JDDGAC_10120at 1808.023 kb on + strandat 1808.092 kb on - strandat 1808.092 kb on - strandat 1808.121 kb on - strandat 1809.445 kb on + strandat 1809.446 kb on - strandat 1809.571 kb on + strandat 1809.632 kb on + strandat 1809.654 kb on + strandat 1809.730 kb on + strand, within JDDGAC_10135at 1809.730 kb on + strand, within JDDGAC_10135at 1809.730 kb on + strand, within JDDGAC_10135at 1809.731 kb on - strand, within JDDGAC_10135at 1809.731 kb on - strand, within JDDGAC_10135at 1809.732 kb on + strand, within JDDGAC_10135at 1809.732 kb on + strand, within JDDGAC_10135at 1809.732 kb on + strand, within JDDGAC_10135at 1809.733 kb on - strand, within JDDGAC_10135at 1809.733 kb on - strand, within JDDGAC_10135at 1809.783 kb on + strand, within JDDGAC_10135at 1809.807 kb on - strand, within JDDGAC_10135at 1810.094 kb on - strand, within JDDGAC_10135at 1810.183 kb on - strand, within JDDGAC_10135at 1810.183 kb on - strand, within JDDGAC_10135at 1810.325 kb on - strand, within JDDGAC_10135at 1810.334 kb on + strand, within JDDGAC_10135at 1810.335 kb on - strand, within JDDGAC_10135

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_JK32
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1,807,507 + JDDGAC_10115 0.47 -0.1
1,807,508 - JDDGAC_10115 0.48 -0.0
1,807,528 - JDDGAC_10115 0.54 +1.0
1,807,550 + JDDGAC_10115 0.60 -0.8
1,807,647 + JDDGAC_10115 0.90 +0.9
1,807,731 - JDDGAC_10120 0.20 -1.0
1,807,731 - JDDGAC_10120 0.20 -1.3
1,807,731 - JDDGAC_10120 0.20 +0.4
1,807,789 - JDDGAC_10120 0.42 -0.3
1,807,828 + JDDGAC_10120 0.57 +0.3
1,807,828 + JDDGAC_10120 0.57 -0.1
1,807,866 - JDDGAC_10120 0.71 -0.6
1,808,023 + +0.0
1,808,092 - -0.3
1,808,092 - +0.1
1,808,121 - -1.4
1,809,445 + +0.5
1,809,446 - -0.3
1,809,571 + -1.1
1,809,632 + +0.1
1,809,654 + -0.3
1,809,730 + JDDGAC_10135 0.12 -0.3
1,809,730 + JDDGAC_10135 0.12 -0.3
1,809,730 + JDDGAC_10135 0.12 -1.2
1,809,731 - JDDGAC_10135 0.12 +0.8
1,809,731 - JDDGAC_10135 0.12 +0.9
1,809,732 + JDDGAC_10135 0.12 -1.4
1,809,732 + JDDGAC_10135 0.12 -0.3
1,809,732 + JDDGAC_10135 0.12 +0.2
1,809,733 - JDDGAC_10135 0.12 +0.9
1,809,733 - JDDGAC_10135 0.12 +1.7
1,809,783 + JDDGAC_10135 0.14 -0.2
1,809,807 - JDDGAC_10135 0.15 +0.4
1,810,094 - JDDGAC_10135 0.26 -1.6
1,810,183 - JDDGAC_10135 0.29 -0.3
1,810,183 - JDDGAC_10135 0.29 -1.9
1,810,325 - JDDGAC_10135 0.35 +0.9
1,810,334 + JDDGAC_10135 0.35 -1.1
1,810,335 - JDDGAC_10135 0.35 -0.3

Or see this region's nucleotide sequence