Experiment: WM_JK32
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_10115 and JDDGAC_10120 overlap by 1 nucleotides JDDGAC_10120 and tnp-IS3 are separated by 207 nucleotides tnp-IS3 and tnp-IS3 overlap by 1 nucleotides tnp-IS3 and JDDGAC_10135 are separated by 39 nucleotides
JDDGAC_10115: JDDGAC_10115 - phage tail protein, at 1,807,351 to 1,807,680
_10115
JDDGAC_10120: JDDGAC_10120 - phage tail tape measure protein, at 1,807,680 to 1,807,940
_10120
JDDGAC_10125: tnp-IS3 - IS3 family transposase, at 1,808,148 to 1,808,474
tnp-IS3
JDDGAC_10130: tnp-IS3 - IS3 family transposase, at 1,808,474 to 1,809,361
tnp-IS3
JDDGAC_10135: JDDGAC_10135 - phage tail tape measure protein, at 1,809,401 to 1,812,058
_10135
Position (kb)
1808
1809
1810 Strain fitness (log2 ratio)
-2
-1
0
1 at 1807.507 kb on + strand, within JDDGAC_10115 at 1807.508 kb on - strand, within JDDGAC_10115 at 1807.528 kb on - strand, within JDDGAC_10115 at 1807.550 kb on + strand, within JDDGAC_10115 at 1807.647 kb on + strand, within JDDGAC_10115 at 1807.731 kb on - strand, within JDDGAC_10120 at 1807.731 kb on - strand, within JDDGAC_10120 at 1807.731 kb on - strand, within JDDGAC_10120 at 1807.789 kb on - strand, within JDDGAC_10120 at 1807.828 kb on + strand, within JDDGAC_10120 at 1807.828 kb on + strand, within JDDGAC_10120 at 1807.866 kb on - strand, within JDDGAC_10120 at 1808.023 kb on + strand at 1808.092 kb on - strand at 1808.092 kb on - strand at 1808.121 kb on - strand at 1809.445 kb on + strand at 1809.446 kb on - strand at 1809.571 kb on + strand at 1809.632 kb on + strand at 1809.654 kb on + strand at 1809.730 kb on + strand, within JDDGAC_10135 at 1809.730 kb on + strand, within JDDGAC_10135 at 1809.730 kb on + strand, within JDDGAC_10135 at 1809.731 kb on - strand, within JDDGAC_10135 at 1809.731 kb on - strand, within JDDGAC_10135 at 1809.732 kb on + strand, within JDDGAC_10135 at 1809.732 kb on + strand, within JDDGAC_10135 at 1809.732 kb on + strand, within JDDGAC_10135 at 1809.733 kb on - strand, within JDDGAC_10135 at 1809.733 kb on - strand, within JDDGAC_10135 at 1809.783 kb on + strand, within JDDGAC_10135 at 1809.807 kb on - strand, within JDDGAC_10135 at 1810.094 kb on - strand, within JDDGAC_10135 at 1810.183 kb on - strand, within JDDGAC_10135 at 1810.183 kb on - strand, within JDDGAC_10135 at 1810.325 kb on - strand, within JDDGAC_10135 at 1810.334 kb on + strand, within JDDGAC_10135 at 1810.335 kb on - strand, within JDDGAC_10135
Per-strain Table
Position Strand Gene LocusTag Fraction WM_JK32 remove 1,807,507 + JDDGAC_10115 0.47 -0.1 1,807,508 - JDDGAC_10115 0.48 -0.0 1,807,528 - JDDGAC_10115 0.54 +1.0 1,807,550 + JDDGAC_10115 0.60 -0.8 1,807,647 + JDDGAC_10115 0.90 +0.9 1,807,731 - JDDGAC_10120 0.20 -1.0 1,807,731 - JDDGAC_10120 0.20 -1.3 1,807,731 - JDDGAC_10120 0.20 +0.4 1,807,789 - JDDGAC_10120 0.42 -0.3 1,807,828 + JDDGAC_10120 0.57 +0.3 1,807,828 + JDDGAC_10120 0.57 -0.1 1,807,866 - JDDGAC_10120 0.71 -0.6 1,808,023 + +0.0 1,808,092 - -0.3 1,808,092 - +0.1 1,808,121 - -1.4 1,809,445 + +0.5 1,809,446 - -0.3 1,809,571 + -1.1 1,809,632 + +0.1 1,809,654 + -0.3 1,809,730 + JDDGAC_10135 0.12 -0.3 1,809,730 + JDDGAC_10135 0.12 -0.3 1,809,730 + JDDGAC_10135 0.12 -1.2 1,809,731 - JDDGAC_10135 0.12 +0.8 1,809,731 - JDDGAC_10135 0.12 +0.9 1,809,732 + JDDGAC_10135 0.12 -1.4 1,809,732 + JDDGAC_10135 0.12 -0.3 1,809,732 + JDDGAC_10135 0.12 +0.2 1,809,733 - JDDGAC_10135 0.12 +0.9 1,809,733 - JDDGAC_10135 0.12 +1.7 1,809,783 + JDDGAC_10135 0.14 -0.2 1,809,807 - JDDGAC_10135 0.15 +0.4 1,810,094 - JDDGAC_10135 0.26 -1.6 1,810,183 - JDDGAC_10135 0.29 -0.3 1,810,183 - JDDGAC_10135 0.29 -1.9 1,810,325 - JDDGAC_10135 0.35 +0.9 1,810,334 + JDDGAC_10135 0.35 -1.1 1,810,335 - JDDGAC_10135 0.35 -0.3
Or see this region's nucleotide sequence