Experiment: WM_JK32
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_06695 and JDDGAC_06700 overlap by 4 nucleotides JDDGAC_06700 and JDDGAC_06705 are separated by 5 nucleotides JDDGAC_06705 and JDDGAC_06710 overlap by 8 nucleotides JDDGAC_06710 and JDDGAC_06715 overlap by 11 nucleotides JDDGAC_06715 and JDDGAC_06720 overlap by 8 nucleotides
JDDGAC_06695: JDDGAC_06695 - DNA primase, at 1,164,789 to 1,166,189
_06695
JDDGAC_06700: JDDGAC_06700 - DUF4222 domain-containing protein, at 1,166,186 to 1,166,485
_06700
JDDGAC_06705: JDDGAC_06705 - hypothetical protein, at 1,166,491 to 1,166,724
_06705
JDDGAC_06710: JDDGAC_06710 - Putative prophage protein, at 1,166,717 to 1,167,181
_06710
JDDGAC_06715: JDDGAC_06715 - hypothetical protein, at 1,167,171 to 1,167,383
_06715
JDDGAC_06720: JDDGAC_06720 - host cell division inhibitor Icd-like protein, at 1,167,376 to 1,168,320
_06720
Position (kb)
1166
1167 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1165.496 kb on - strand, within JDDGAC_06695 at 1165.557 kb on + strand, within JDDGAC_06695 at 1165.579 kb on + strand, within JDDGAC_06695 at 1165.580 kb on - strand, within JDDGAC_06695 at 1165.580 kb on - strand, within JDDGAC_06695 at 1165.667 kb on + strand, within JDDGAC_06695 at 1165.688 kb on - strand, within JDDGAC_06695 at 1165.689 kb on + strand, within JDDGAC_06695 at 1165.689 kb on + strand, within JDDGAC_06695 at 1165.698 kb on + strand, within JDDGAC_06695 at 1165.889 kb on - strand, within JDDGAC_06695 at 1165.902 kb on + strand, within JDDGAC_06695 at 1165.903 kb on - strand, within JDDGAC_06695 at 1165.903 kb on - strand, within JDDGAC_06695 at 1165.970 kb on - strand, within JDDGAC_06695 at 1166.286 kb on - strand, within JDDGAC_06700 at 1166.341 kb on - strand, within JDDGAC_06700 at 1166.711 kb on + strand at 1166.772 kb on + strand, within JDDGAC_06710 at 1166.823 kb on + strand, within JDDGAC_06710 at 1166.983 kb on + strand, within JDDGAC_06710 at 1166.983 kb on + strand, within JDDGAC_06710 at 1167.060 kb on + strand, within JDDGAC_06710 at 1167.086 kb on - strand, within JDDGAC_06710 at 1167.274 kb on - strand, within JDDGAC_06715 at 1167.284 kb on + strand, within JDDGAC_06715 at 1167.319 kb on - strand, within JDDGAC_06715 at 1167.366 kb on - strand at 1167.377 kb on + strand at 1167.416 kb on - strand at 1167.541 kb on + strand, within JDDGAC_06720 at 1167.542 kb on - strand, within JDDGAC_06720 at 1167.555 kb on + strand, within JDDGAC_06720 at 1167.556 kb on - strand, within JDDGAC_06720 at 1167.583 kb on + strand, within JDDGAC_06720 at 1167.584 kb on - strand, within JDDGAC_06720 at 1167.588 kb on + strand, within JDDGAC_06720 at 1167.588 kb on + strand, within JDDGAC_06720
Per-strain Table
Position Strand Gene LocusTag Fraction WM_JK32 remove 1,165,496 - JDDGAC_06695 0.50 -1.2 1,165,557 + JDDGAC_06695 0.55 +0.7 1,165,579 + JDDGAC_06695 0.56 -0.2 1,165,580 - JDDGAC_06695 0.56 -3.0 1,165,580 - JDDGAC_06695 0.56 -4.1 1,165,667 + JDDGAC_06695 0.63 +0.4 1,165,688 - JDDGAC_06695 0.64 -0.2 1,165,689 + JDDGAC_06695 0.64 -0.1 1,165,689 + JDDGAC_06695 0.64 +0.4 1,165,698 + JDDGAC_06695 0.65 -2.4 1,165,889 - JDDGAC_06695 0.79 -1.1 1,165,902 + JDDGAC_06695 0.79 +1.3 1,165,903 - JDDGAC_06695 0.80 -1.9 1,165,903 - JDDGAC_06695 0.80 +0.4 1,165,970 - JDDGAC_06695 0.84 +0.3 1,166,286 - JDDGAC_06700 0.33 -2.2 1,166,341 - JDDGAC_06700 0.52 -1.5 1,166,711 + +0.3 1,166,772 + JDDGAC_06710 0.12 +0.2 1,166,823 + JDDGAC_06710 0.23 -1.3 1,166,983 + JDDGAC_06710 0.57 +1.4 1,166,983 + JDDGAC_06710 0.57 +0.8 1,167,060 + JDDGAC_06710 0.74 -1.8 1,167,086 - JDDGAC_06710 0.79 +0.8 1,167,274 - JDDGAC_06715 0.48 -1.6 1,167,284 + JDDGAC_06715 0.53 +0.4 1,167,319 - JDDGAC_06715 0.69 -0.7 1,167,366 - -0.5 1,167,377 + -2.0 1,167,416 - -1.8 1,167,541 + JDDGAC_06720 0.17 -0.9 1,167,542 - JDDGAC_06720 0.18 -2.4 1,167,555 + JDDGAC_06720 0.19 -0.6 1,167,556 - JDDGAC_06720 0.19 +0.5 1,167,583 + JDDGAC_06720 0.22 +1.4 1,167,584 - JDDGAC_06720 0.22 -0.7 1,167,588 + JDDGAC_06720 0.22 +1.0 1,167,588 + JDDGAC_06720 0.22 -0.2
Or see this region's nucleotide sequence