Experiment: WM_JK32
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_06670 and JDDGAC_06675 are separated by 251 nucleotides JDDGAC_06675 and JDDGAC_06680 are separated by 126 nucleotides JDDGAC_06680 and ssb are separated by 10 nucleotides ssb and JDDGAC_06690 overlap by 4 nucleotides JDDGAC_06690 and JDDGAC_06695 are separated by 200 nucleotides
JDDGAC_06670: JDDGAC_06670 - hypothetical protein, at 1,162,838 to 1,163,044
_06670
JDDGAC_06675: JDDGAC_06675 - hypothetical protein, at 1,163,296 to 1,163,520
_06675
JDDGAC_06680: JDDGAC_06680 - PerC family transcriptional regulator, at 1,163,647 to 1,163,919
_06680
JDDGAC_06685: ssb - single-stranded DNA-binding protein, at 1,163,930 to 1,164,340
ssb
JDDGAC_06690: JDDGAC_06690 - hypothetical protein, at 1,164,337 to 1,164,588
_06690
JDDGAC_06695: JDDGAC_06695 - DNA primase, at 1,164,789 to 1,166,189
_06695
Position (kb) 1163
1164
1165 Strain fitness (log2 ratio) -2
-1
0
1 at 1163.007 kb on - strand, within JDDGAC_06670 at 1163.007 kb on - strand, within JDDGAC_06670 at 1163.324 kb on - strand, within JDDGAC_06675 at 1163.336 kb on - strand, within JDDGAC_06675 at 1163.495 kb on - strand, within JDDGAC_06675 at 1163.559 kb on + strand at 1163.560 kb on - strand at 1163.599 kb on + strand at 1163.649 kb on - strand at 1163.649 kb on - strand at 1163.692 kb on + strand, within JDDGAC_06680 at 1163.693 kb on - strand, within JDDGAC_06680 at 1163.693 kb on - strand, within JDDGAC_06680 at 1163.709 kb on - strand, within JDDGAC_06680 at 1163.709 kb on - strand, within JDDGAC_06680 at 1163.915 kb on - strand at 1164.045 kb on - strand, within ssb at 1164.045 kb on - strand, within ssb at 1164.155 kb on - strand, within ssb at 1164.155 kb on - strand, within ssb at 1164.155 kb on - strand, within ssb at 1164.452 kb on - strand, within JDDGAC_06690 at 1164.477 kb on - strand, within JDDGAC_06690 at 1164.500 kb on - strand, within JDDGAC_06690 at 1164.520 kb on + strand, within JDDGAC_06690 at 1164.521 kb on - strand, within JDDGAC_06690 at 1164.521 kb on - strand, within JDDGAC_06690 at 1164.713 kb on + strand at 1164.802 kb on - strand at 1165.057 kb on - strand, within JDDGAC_06695
Per-strain Table
Position Strand Gene LocusTag Fraction WM_JK32 remove 1,163,007 - JDDGAC_06670 0.82 -0.8 1,163,007 - JDDGAC_06670 0.82 +0.9 1,163,324 - JDDGAC_06675 0.12 -1.8 1,163,336 - JDDGAC_06675 0.18 +0.4 1,163,495 - JDDGAC_06675 0.88 -1.5 1,163,559 + -0.6 1,163,560 - -0.1 1,163,599 + -0.3 1,163,649 - +1.3 1,163,649 - +0.1 1,163,692 + JDDGAC_06680 0.16 -0.6 1,163,693 - JDDGAC_06680 0.17 -0.6 1,163,693 - JDDGAC_06680 0.17 +0.1 1,163,709 - JDDGAC_06680 0.23 -0.7 1,163,709 - JDDGAC_06680 0.23 +0.6 1,163,915 - -0.1 1,164,045 - ssb JDDGAC_06685 0.28 -0.7 1,164,045 - ssb JDDGAC_06685 0.28 -0.2 1,164,155 - ssb JDDGAC_06685 0.55 +0.3 1,164,155 - ssb JDDGAC_06685 0.55 -0.9 1,164,155 - ssb JDDGAC_06685 0.55 -1.2 1,164,452 - JDDGAC_06690 0.46 -1.0 1,164,477 - JDDGAC_06690 0.56 -0.6 1,164,500 - JDDGAC_06690 0.65 -0.8 1,164,520 + JDDGAC_06690 0.73 -0.8 1,164,521 - JDDGAC_06690 0.73 +0.1 1,164,521 - JDDGAC_06690 0.73 -2.1 1,164,713 + +1.0 1,164,802 - -1.7 1,165,057 - JDDGAC_06695 0.19 -0.9
Or see this region's nucleotide sequence