Experiment: WM_JK32
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ea10 and JDDGAC_28775 are separated by 182 nucleotides JDDGAC_28775 and JDDGAC_28780 are separated by 58 nucleotides JDDGAC_28780 and JDDGAC_28785 overlap by 23 nucleotides JDDGAC_28785 and JDDGAC_28790 are separated by 568 nucleotides
JDDGAC_28770: ea10 - Protein ea10, at 5,511,416 to 5,511,784
ea10
JDDGAC_28775: JDDGAC_28775 - hypothetical protein, at 5,511,967 to 5,512,218
_28775
JDDGAC_28780: JDDGAC_28780 - antitermination protein N, at 5,512,277 to 5,512,549
_28780
JDDGAC_28785: JDDGAC_28785 - hypothetical protein, at 5,512,527 to 5,512,709
_28785
JDDGAC_28790: JDDGAC_28790 - hypothetical protein, at 5,513,278 to 5,513,799
_28790
Position (kb) 5512
5513 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5511.562 kb on - strand, within ea10 at 5511.562 kb on - strand, within ea10 at 5511.711 kb on - strand, within ea10 at 5511.872 kb on - strand at 5512.008 kb on - strand, within JDDGAC_28775 at 5512.008 kb on - strand, within JDDGAC_28775 at 5512.011 kb on + strand, within JDDGAC_28775 at 5512.012 kb on - strand, within JDDGAC_28775 at 5512.012 kb on - strand, within JDDGAC_28775 at 5512.220 kb on + strand at 5512.221 kb on - strand at 5512.232 kb on + strand at 5512.233 kb on - strand at 5512.421 kb on + strand, within JDDGAC_28780 at 5512.421 kb on + strand, within JDDGAC_28780 at 5512.549 kb on + strand at 5512.549 kb on + strand at 5512.549 kb on + strand at 5512.549 kb on + strand at 5512.549 kb on + strand at 5512.549 kb on + strand at 5512.549 kb on + strand at 5512.549 kb on + strand at 5512.631 kb on + strand, within JDDGAC_28785 at 5512.631 kb on + strand, within JDDGAC_28785 at 5512.631 kb on + strand, within JDDGAC_28785 at 5512.632 kb on - strand, within JDDGAC_28785 at 5512.743 kb on + strand at 5512.857 kb on + strand at 5512.857 kb on + strand at 5513.094 kb on + strand at 5513.134 kb on - strand at 5513.172 kb on - strand at 5513.172 kb on - strand at 5513.182 kb on + strand at 5513.182 kb on + strand at 5513.189 kb on + strand at 5513.194 kb on + strand at 5513.195 kb on - strand at 5513.425 kb on - strand, within JDDGAC_28790
Per-strain Table
Position Strand Gene LocusTag Fraction WM_JK32 remove 5,511,562 - ea10 JDDGAC_28770 0.40 +0.2 5,511,562 - ea10 JDDGAC_28770 0.40 -0.4 5,511,711 - ea10 JDDGAC_28770 0.80 +0.8 5,511,872 - +0.4 5,512,008 - JDDGAC_28775 0.16 +0.2 5,512,008 - JDDGAC_28775 0.16 -0.2 5,512,011 + JDDGAC_28775 0.17 -0.9 5,512,012 - JDDGAC_28775 0.18 +0.2 5,512,012 - JDDGAC_28775 0.18 -1.7 5,512,220 + +1.5 5,512,221 - +0.7 5,512,232 + +2.2 5,512,233 - +0.7 5,512,421 + JDDGAC_28780 0.53 -0.2 5,512,421 + JDDGAC_28780 0.53 +0.3 5,512,549 + +0.6 5,512,549 + -1.5 5,512,549 + +0.8 5,512,549 + +0.6 5,512,549 + -0.1 5,512,549 + -0.8 5,512,549 + -0.0 5,512,549 + +0.6 5,512,631 + JDDGAC_28785 0.57 -2.2 5,512,631 + JDDGAC_28785 0.57 -1.7 5,512,631 + JDDGAC_28785 0.57 +0.9 5,512,632 - JDDGAC_28785 0.57 -0.8 5,512,743 + -0.1 5,512,857 + -0.9 5,512,857 + +1.2 5,513,094 + -0.5 5,513,134 - -0.3 5,513,172 - -0.1 5,513,172 - -0.4 5,513,182 + -0.1 5,513,182 + +1.1 5,513,189 + -0.6 5,513,194 + -2.2 5,513,195 - -0.0 5,513,425 - JDDGAC_28790 0.28 +0.3
Or see this region's nucleotide sequence