Experiment: WM_JK32
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rimM and trmD are separated by 30 nucleotides trmD and rplS are separated by 41 nucleotides rplS and yfiB are separated by 76 nucleotides yfiB and dgcN are separated by 15 nucleotides
JDDGAC_24845: rimM - ribosome maturation factor RimM, at 4,753,389 to 4,753,937
rimM
JDDGAC_24850: trmD - tRNA (guanosine(37)-N1)-methyltransferase TrmD, at 4,753,968 to 4,754,735
trmD
JDDGAC_24855: rplS - 50S ribosomal protein L19, at 4,754,777 to 4,755,124
rplS
JDDGAC_24860: yfiB - OmpA family protein, at 4,755,201 to 4,755,683
yfiB
JDDGAC_24865: dgcN - diguanylate cyclase DgcN, at 4,755,699 to 4,756,925
dgcN
Position (kb) 4754
4755
4756 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4755.202 kb on + strand at 4755.209 kb on + strand at 4755.210 kb on - strand at 4755.210 kb on - strand at 4755.212 kb on + strand at 4755.213 kb on - strand at 4755.213 kb on - strand at 4755.372 kb on + strand, within yfiB at 4755.373 kb on - strand, within yfiB at 4755.385 kb on + strand, within yfiB at 4755.400 kb on + strand, within yfiB at 4755.400 kb on + strand, within yfiB at 4755.400 kb on + strand, within yfiB at 4755.400 kb on + strand, within yfiB at 4755.423 kb on - strand, within yfiB at 4755.436 kb on - strand, within yfiB at 4755.566 kb on + strand, within yfiB at 4755.639 kb on + strand at 4755.683 kb on + strand at 4755.689 kb on + strand at 4755.691 kb on + strand at 4755.691 kb on + strand at 4755.692 kb on - strand at 4755.692 kb on - strand at 4755.700 kb on + strand at 4755.740 kb on - strand at 4755.740 kb on - strand at 4755.743 kb on + strand at 4755.743 kb on + strand at 4755.744 kb on - strand at 4755.744 kb on - strand at 4755.744 kb on - strand at 4755.744 kb on - strand at 4755.744 kb on - strand at 4755.813 kb on + strand at 4755.813 kb on + strand at 4755.813 kb on + strand at 4755.861 kb on - strand, within dgcN at 4755.920 kb on - strand, within dgcN at 4755.920 kb on - strand, within dgcN at 4755.920 kb on - strand, within dgcN at 4755.963 kb on - strand, within dgcN at 4755.963 kb on - strand, within dgcN at 4755.963 kb on - strand, within dgcN at 4756.050 kb on - strand, within dgcN at 4756.050 kb on - strand, within dgcN at 4756.050 kb on - strand, within dgcN at 4756.061 kb on + strand, within dgcN at 4756.062 kb on - strand, within dgcN at 4756.081 kb on - strand, within dgcN at 4756.122 kb on - strand, within dgcN
Per-strain Table
Position Strand Gene LocusTag Fraction WM_JK32 remove 4,755,202 + +0.2 4,755,209 + +0.2 4,755,210 - -0.4 4,755,210 - +1.0 4,755,212 + +0.4 4,755,213 - +0.6 4,755,213 - +1.0 4,755,372 + yfiB JDDGAC_24860 0.35 -0.2 4,755,373 - yfiB JDDGAC_24860 0.36 +0.0 4,755,385 + yfiB JDDGAC_24860 0.38 +0.0 4,755,400 + yfiB JDDGAC_24860 0.41 +0.2 4,755,400 + yfiB JDDGAC_24860 0.41 +0.1 4,755,400 + yfiB JDDGAC_24860 0.41 +0.4 4,755,400 + yfiB JDDGAC_24860 0.41 -0.2 4,755,423 - yfiB JDDGAC_24860 0.46 +0.5 4,755,436 - yfiB JDDGAC_24860 0.49 +0.2 4,755,566 + yfiB JDDGAC_24860 0.76 -2.5 4,755,639 + +1.0 4,755,683 + +1.0 4,755,689 + +1.2 4,755,691 + -0.6 4,755,691 + +1.2 4,755,692 - -0.3 4,755,692 - +0.3 4,755,700 + +1.4 4,755,740 - +0.2 4,755,740 - +0.9 4,755,743 + +0.0 4,755,743 + -0.3 4,755,744 - -0.6 4,755,744 - +1.5 4,755,744 - -0.1 4,755,744 - -0.2 4,755,744 - +2.1 4,755,813 + -0.4 4,755,813 + -1.4 4,755,813 + +0.3 4,755,861 - dgcN JDDGAC_24865 0.13 -0.3 4,755,920 - dgcN JDDGAC_24865 0.18 -0.2 4,755,920 - dgcN JDDGAC_24865 0.18 +1.6 4,755,920 - dgcN JDDGAC_24865 0.18 -0.6 4,755,963 - dgcN JDDGAC_24865 0.22 +0.9 4,755,963 - dgcN JDDGAC_24865 0.22 -0.7 4,755,963 - dgcN JDDGAC_24865 0.22 +0.9 4,756,050 - dgcN JDDGAC_24865 0.29 +0.3 4,756,050 - dgcN JDDGAC_24865 0.29 -0.2 4,756,050 - dgcN JDDGAC_24865 0.29 -0.4 4,756,061 + dgcN JDDGAC_24865 0.30 -0.4 4,756,062 - dgcN JDDGAC_24865 0.30 -0.2 4,756,081 - dgcN JDDGAC_24865 0.31 -0.1 4,756,122 - dgcN JDDGAC_24865 0.34 +0.3
Or see this region's nucleotide sequence