Experiment: WM_JK32
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ygcG and JDDGAC_23955 are separated by 233 nucleotides JDDGAC_23955 and JDDGAC_23960 are separated by 13 nucleotides JDDGAC_23960 and queE are separated by 280 nucleotides
JDDGAC_23950: ygcG - TPM-phosphatase domain-containing protein, at 4,592,358 to 4,593,506
ygcG
JDDGAC_23955: JDDGAC_23955 - TPM-phosphatase domain-containing protein, at 4,593,740 to 4,594,414
_23955
JDDGAC_23960: JDDGAC_23960 - LemA family protein, at 4,594,428 to 4,594,922
_23960
JDDGAC_23965: queE - 7-carboxy-7-deazaguanine synthase QueE, at 4,595,203 to 4,595,874
queE
Position (kb) 4594
4595 Strain fitness (log2 ratio) -2
-1
0
1 at 4593.430 kb on - strand at 4593.490 kb on - strand at 4593.490 kb on - strand at 4593.500 kb on + strand at 4593.501 kb on - strand at 4593.613 kb on - strand at 4593.637 kb on + strand at 4593.753 kb on - strand at 4593.779 kb on + strand at 4593.781 kb on + strand at 4593.782 kb on - strand at 4593.782 kb on - strand at 4593.801 kb on - strand at 4593.801 kb on - strand at 4593.805 kb on + strand at 4593.838 kb on + strand, within JDDGAC_23955 at 4593.839 kb on - strand, within JDDGAC_23955 at 4593.841 kb on - strand, within JDDGAC_23955 at 4593.841 kb on - strand, within JDDGAC_23955 at 4593.857 kb on - strand, within JDDGAC_23955 at 4593.857 kb on - strand, within JDDGAC_23955 at 4593.866 kb on + strand, within JDDGAC_23955 at 4593.867 kb on - strand, within JDDGAC_23955 at 4593.867 kb on - strand, within JDDGAC_23955 at 4593.938 kb on + strand, within JDDGAC_23955 at 4594.040 kb on - strand, within JDDGAC_23955 at 4594.067 kb on - strand, within JDDGAC_23955 at 4594.069 kb on + strand, within JDDGAC_23955 at 4594.131 kb on - strand, within JDDGAC_23955 at 4594.332 kb on + strand, within JDDGAC_23955 at 4594.332 kb on + strand, within JDDGAC_23955 at 4594.333 kb on - strand, within JDDGAC_23955 at 4594.414 kb on + strand at 4594.543 kb on - strand, within JDDGAC_23960 at 4594.574 kb on - strand, within JDDGAC_23960 at 4594.641 kb on + strand, within JDDGAC_23960 at 4594.828 kb on - strand, within JDDGAC_23960 at 4594.840 kb on - strand, within JDDGAC_23960 at 4594.861 kb on + strand, within JDDGAC_23960 at 4594.924 kb on - strand at 4595.202 kb on + strand at 4595.209 kb on + strand at 4595.397 kb on + strand, within queE at 4595.397 kb on + strand, within queE at 4595.397 kb on + strand, within queE at 4595.397 kb on + strand, within queE at 4595.397 kb on + strand, within queE at 4595.397 kb on + strand, within queE at 4595.397 kb on + strand, within queE at 4595.398 kb on - strand, within queE at 4595.453 kb on - strand, within queE at 4595.455 kb on - strand, within queE at 4595.541 kb on + strand, within queE at 4595.577 kb on - strand, within queE at 4595.583 kb on + strand, within queE at 4595.696 kb on + strand, within queE at 4595.703 kb on + strand, within queE at 4595.704 kb on - strand, within queE at 4595.746 kb on - strand, within queE at 4595.858 kb on - strand at 4595.862 kb on - strand at 4595.896 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_JK32 remove 4,593,430 - +0.0 4,593,490 - +0.2 4,593,490 - -0.2 4,593,500 + +0.6 4,593,501 - -1.4 4,593,613 - +0.2 4,593,637 + +0.5 4,593,753 - +0.1 4,593,779 + -0.7 4,593,781 + +0.0 4,593,782 - +1.4 4,593,782 - -0.1 4,593,801 - +0.4 4,593,801 - -0.6 4,593,805 + -1.9 4,593,838 + JDDGAC_23955 0.15 +0.0 4,593,839 - JDDGAC_23955 0.15 +1.3 4,593,841 - JDDGAC_23955 0.15 +0.1 4,593,841 - JDDGAC_23955 0.15 +0.6 4,593,857 - JDDGAC_23955 0.17 +0.9 4,593,857 - JDDGAC_23955 0.17 +0.3 4,593,866 + JDDGAC_23955 0.19 +0.4 4,593,867 - JDDGAC_23955 0.19 -0.6 4,593,867 - JDDGAC_23955 0.19 -0.1 4,593,938 + JDDGAC_23955 0.29 -0.1 4,594,040 - JDDGAC_23955 0.44 -0.9 4,594,067 - JDDGAC_23955 0.48 -0.5 4,594,069 + JDDGAC_23955 0.49 -1.4 4,594,131 - JDDGAC_23955 0.58 +0.1 4,594,332 + JDDGAC_23955 0.88 -0.3 4,594,332 + JDDGAC_23955 0.88 +0.3 4,594,333 - JDDGAC_23955 0.88 +0.1 4,594,414 + -0.1 4,594,543 - JDDGAC_23960 0.23 -2.1 4,594,574 - JDDGAC_23960 0.29 -0.0 4,594,641 + JDDGAC_23960 0.43 +0.9 4,594,828 - JDDGAC_23960 0.81 -0.1 4,594,840 - JDDGAC_23960 0.83 +0.1 4,594,861 + JDDGAC_23960 0.87 -0.1 4,594,924 - +0.0 4,595,202 + -0.0 4,595,209 + +0.0 4,595,397 + queE JDDGAC_23965 0.29 +0.4 4,595,397 + queE JDDGAC_23965 0.29 -1.6 4,595,397 + queE JDDGAC_23965 0.29 +1.0 4,595,397 + queE JDDGAC_23965 0.29 -0.3 4,595,397 + queE JDDGAC_23965 0.29 +0.6 4,595,397 + queE JDDGAC_23965 0.29 +0.7 4,595,397 + queE JDDGAC_23965 0.29 -0.3 4,595,398 - queE JDDGAC_23965 0.29 +0.5 4,595,453 - queE JDDGAC_23965 0.37 +0.4 4,595,455 - queE JDDGAC_23965 0.38 +0.1 4,595,541 + queE JDDGAC_23965 0.50 -0.0 4,595,577 - queE JDDGAC_23965 0.56 +0.4 4,595,583 + queE JDDGAC_23965 0.57 -0.0 4,595,696 + queE JDDGAC_23965 0.73 +1.0 4,595,703 + queE JDDGAC_23965 0.74 -1.0 4,595,704 - queE JDDGAC_23965 0.75 -0.5 4,595,746 - queE JDDGAC_23965 0.81 +0.9 4,595,858 - -0.3 4,595,862 - -0.1 4,595,896 - -0.3
Or see this region's nucleotide sequence