Strain Fitness in Escherichia coli ECRC98 around JDDGAC_17105

Experiment: WM_JK32

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttuf and Thr_trna are separated by 114 nucleotidesThr_trna and Gly_trna are separated by 6 nucleotidesGly_trna and Tyr_trna are separated by 116 nucleotidesTyr_trna and Thr_trna are separated by 8 nucleotidesThr_trna and coaA are separated by 385 nucleotides JDDGAC_17085: tuf - elongation factor Tu, at 3,231,831 to 3,233,015 tuf JDDGAC_17090: Thr_trna - tRNA-Thr(ggt), at 3,233,130 to 3,233,205 _trna JDDGAC_17095: Gly_trna - tRNA-Gly(tcc), at 3,233,212 to 3,233,286 _trna JDDGAC_17100: Tyr_trna - tRNA-Tyr(gta), at 3,233,403 to 3,233,487 _trna JDDGAC_17105: Thr_trna - tRNA-Thr(tgt), at 3,233,496 to 3,233,571 _trna JDDGAC_17110: coaA - type I pantothenate kinase, at 3,233,957 to 3,234,883 coaA Position (kb) 3233 3234Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3232.944 kb on - strandat 3233.050 kb on + strandat 3233.051 kb on - strandat 3233.095 kb on + strandat 3233.693 kb on - strandat 3233.737 kb on + strandat 3233.737 kb on + strandat 3233.738 kb on - strandat 3233.744 kb on + strandat 3233.744 kb on + strandat 3233.744 kb on + strandat 3233.745 kb on - strandat 3233.766 kb on + strandat 3233.766 kb on + strandat 3233.767 kb on - strandat 3233.791 kb on + strandat 3233.792 kb on - strandat 3233.816 kb on + strandat 3233.820 kb on - strandat 3233.911 kb on + strandat 3233.911 kb on + strandat 3233.911 kb on + strandat 3233.912 kb on - strandat 3233.912 kb on - strandat 3233.932 kb on + strandat 3233.932 kb on + strandat 3233.932 kb on + strandat 3233.933 kb on - strandat 3233.933 kb on - strandat 3233.933 kb on - strandat 3233.938 kb on + strandat 3233.938 kb on + strandat 3233.938 kb on + strandat 3233.940 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_JK32
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3,232,944 - +0.5
3,233,050 + +0.9
3,233,051 - -1.1
3,233,095 + +0.2
3,233,693 - -0.4
3,233,737 + +0.2
3,233,737 + -0.1
3,233,738 - +0.3
3,233,744 + +0.4
3,233,744 + -0.3
3,233,744 + +0.3
3,233,745 - +0.7
3,233,766 + -0.1
3,233,766 + +0.8
3,233,767 - +0.8
3,233,791 + -1.8
3,233,792 - -1.8
3,233,816 + -0.2
3,233,820 - -0.5
3,233,911 + -0.5
3,233,911 + -0.2
3,233,911 + -0.6
3,233,912 - -1.7
3,233,912 - -3.9
3,233,932 + -0.5
3,233,932 + +0.6
3,233,932 + -0.4
3,233,933 - -1.0
3,233,933 - -1.1
3,233,933 - -0.5
3,233,938 + +0.3
3,233,938 + -0.9
3,233,938 + -0.2
3,233,940 + -0.9

Or see this region's nucleotide sequence