Experiment: WM_JK32
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tuf and Thr_trna are separated by 114 nucleotides Thr_trna and Gly_trna are separated by 6 nucleotides Gly_trna and Tyr_trna are separated by 116 nucleotides Tyr_trna and Thr_trna are separated by 8 nucleotides Thr_trna and coaA are separated by 385 nucleotides
JDDGAC_17085: tuf - elongation factor Tu, at 3,231,831 to 3,233,015
tuf
JDDGAC_17090: Thr_trna - tRNA-Thr(ggt), at 3,233,130 to 3,233,205
_trna
JDDGAC_17095: Gly_trna - tRNA-Gly(tcc), at 3,233,212 to 3,233,286
_trna
JDDGAC_17100: Tyr_trna - tRNA-Tyr(gta), at 3,233,403 to 3,233,487
_trna
JDDGAC_17105: Thr_trna - tRNA-Thr(tgt), at 3,233,496 to 3,233,571
_trna
JDDGAC_17110: coaA - type I pantothenate kinase, at 3,233,957 to 3,234,883
coaA
Position (kb)
3233
3234 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3232.944 kb on - strand at 3233.050 kb on + strand at 3233.051 kb on - strand at 3233.095 kb on + strand at 3233.693 kb on - strand at 3233.737 kb on + strand at 3233.737 kb on + strand at 3233.738 kb on - strand at 3233.744 kb on + strand at 3233.744 kb on + strand at 3233.744 kb on + strand at 3233.745 kb on - strand at 3233.766 kb on + strand at 3233.766 kb on + strand at 3233.767 kb on - strand at 3233.791 kb on + strand at 3233.792 kb on - strand at 3233.816 kb on + strand at 3233.820 kb on - strand at 3233.911 kb on + strand at 3233.911 kb on + strand at 3233.911 kb on + strand at 3233.912 kb on - strand at 3233.912 kb on - strand at 3233.932 kb on + strand at 3233.932 kb on + strand at 3233.932 kb on + strand at 3233.933 kb on - strand at 3233.933 kb on - strand at 3233.933 kb on - strand at 3233.938 kb on + strand at 3233.938 kb on + strand at 3233.938 kb on + strand at 3233.940 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_JK32 remove 3,232,944 - +0.5 3,233,050 + +0.9 3,233,051 - -1.1 3,233,095 + +0.2 3,233,693 - -0.4 3,233,737 + +0.2 3,233,737 + -0.1 3,233,738 - +0.3 3,233,744 + +0.4 3,233,744 + -0.3 3,233,744 + +0.3 3,233,745 - +0.7 3,233,766 + -0.1 3,233,766 + +0.8 3,233,767 - +0.8 3,233,791 + -1.8 3,233,792 - -1.8 3,233,816 + -0.2 3,233,820 - -0.5 3,233,911 + -0.5 3,233,911 + -0.2 3,233,911 + -0.6 3,233,912 - -1.7 3,233,912 - -3.9 3,233,932 + -0.5 3,233,932 + +0.6 3,233,932 + -0.4 3,233,933 - -1.0 3,233,933 - -1.1 3,233,933 - -0.5 3,233,938 + +0.3 3,233,938 + -0.9 3,233,938 + -0.2 3,233,940 + -0.9
Or see this region's nucleotide sequence