Strain Fitness in Escherichia coli ECRC98 around JDDGAC_14195

Experiment: WM_JK32

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsecA and secM are separated by 61 nucleotidessecM and lpxC are separated by 155 nucleotideslpxC and ftsZ are separated by 100 nucleotides JDDGAC_14185: secA - preprotein translocase subunit SecA, at 2,630,400 to 2,633,105 secA JDDGAC_14190: secM - secA translation cis-regulator SecM, at 2,633,167 to 2,633,754 secM JDDGAC_14195: lpxC - UDP-3-O-acyl-N-acetylglucosamine deacetylase, at 2,633,910 to 2,634,827 lpxC JDDGAC_14200: ftsZ - cell division protein FtsZ, at 2,634,928 to 2,636,079 ftsZ Position (kb) 2633 2634 2635Strain fitness (log2 ratio) -1 0 1at 2633.160 kb on - strandat 2633.637 kb on - strand, within secMat 2633.764 kb on + strandat 2633.764 kb on + strandat 2633.764 kb on + strandat 2633.765 kb on - strandat 2633.813 kb on - strandat 2633.822 kb on - strandat 2633.892 kb on - strandat 2633.899 kb on + strandat 2633.902 kb on - strandat 2633.902 kb on - strandat 2634.847 kb on - strandat 2634.866 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_JK32
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2,633,160 - +0.5
2,633,637 - secM JDDGAC_14190 0.80 -0.4
2,633,764 + +0.1
2,633,764 + +0.9
2,633,764 + +0.1
2,633,765 - -0.1
2,633,813 - +0.1
2,633,822 - +0.3
2,633,892 - -1.6
2,633,899 + +1.7
2,633,902 - +0.1
2,633,902 - +0.2
2,634,847 - -0.7
2,634,866 - +0.7

Or see this region's nucleotide sequence