Strain Fitness in Escherichia coli ECRC98 around JDDGAC_11450

Experiment: WM_JK32

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsfmD and fimC are separated by 30 nucleotidesfimC and fimA are separated by 219 nucleotidesfimA and JDDGAC_11455 are separated by 479 nucleotides JDDGAC_11440: sfmD - Outer membrane usher protein SfmD, at 2,070,479 to 2,073,088 sfmD JDDGAC_11445: fimC - type 1 fimbria chaperone FimC, at 2,073,119 to 2,073,811 fimC JDDGAC_11450: fimA - type 1 fimbrial major subunit FimA, at 2,074,031 to 2,074,573 fimA JDDGAC_11455: JDDGAC_11455 - Bifunctional protein FolD, at 2,075,053 to 2,075,919 _11455 Position (kb) 2074 2075Strain fitness (log2 ratio) -3 -2 -1 0 1at 2073.050 kb on - strandat 2073.101 kb on + strandat 2073.102 kb on - strandat 2073.291 kb on + strand, within fimCat 2073.319 kb on + strand, within fimCat 2073.535 kb on + strand, within fimCat 2073.713 kb on - strand, within fimCat 2073.993 kb on + strandat 2074.238 kb on - strand, within fimAat 2074.500 kb on - strand, within fimAat 2074.500 kb on - strand, within fimAat 2074.578 kb on - strandat 2075.006 kb on + strandat 2075.026 kb on + strandat 2075.026 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_JK32
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2,073,050 - -1.5
2,073,101 + +0.9
2,073,102 - -0.1
2,073,291 + fimC JDDGAC_11445 0.25 -0.1
2,073,319 + fimC JDDGAC_11445 0.29 -0.9
2,073,535 + fimC JDDGAC_11445 0.60 +0.3
2,073,713 - fimC JDDGAC_11445 0.86 +0.2
2,073,993 + -1.1
2,074,238 - fimA JDDGAC_11450 0.38 -1.5
2,074,500 - fimA JDDGAC_11450 0.86 +0.1
2,074,500 - fimA JDDGAC_11450 0.86 +0.0
2,074,578 - -1.2
2,075,006 + -0.4
2,075,026 + -3.3
2,075,026 + -2.0

Or see this region's nucleotide sequence