Strain Fitness in Escherichia coli ECRC98 around JDDGAC_08595

Experiment: WM_JK32

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_08585 and JDDGAC_08590 are separated by 465 nucleotidesJDDGAC_08590 and tnp-IS3 are separated by 204 nucleotidestnp-IS3 and tnp-IS3 overlap by 1 nucleotidestnp-IS3 and JDDGAC_08605 are separated by 175 nucleotides JDDGAC_08585: JDDGAC_08585 - lysis protein, at 1,509,293 to 1,509,760 _08585 JDDGAC_08590: JDDGAC_08590 - PerC family transcriptional regulator, at 1,510,226 to 1,510,540 _08590 JDDGAC_08595: tnp-IS3 - IS3 family transposase, at 1,510,745 to 1,511,632 tnp-IS3 JDDGAC_08600: tnp-IS3 - IS3 family transposase, at 1,511,632 to 1,511,958 tnp-IS3 JDDGAC_08605: JDDGAC_08605 - 9-O-acetyl-N-acetylneuraminic acid deacetylase, at 1,512,134 to 1,513,984 _08605 Position (kb) 1510 1511 1512Strain fitness (log2 ratio) -1 0 1at 1509.751 kb on + strandat 1509.751 kb on + strandat 1512.027 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_JK32
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1,509,751 + +0.2
1,509,751 + -1.5
1,512,027 - -0.2

Or see this region's nucleotide sequence