Experiment: WM_JK32
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_05565 and JDDGAC_05570 are separated by 14 nucleotides JDDGAC_05570 and JDDGAC_05575 are separated by 15 nucleotides JDDGAC_05575 and JDDGAC_05580 overlap by 8 nucleotides JDDGAC_05580 and JDDGAC_05585 overlap by 11 nucleotides JDDGAC_05585 and gp16 overlap by 4 nucleotides gp16 and mor are separated by 69 nucleotides
JDDGAC_05565: JDDGAC_05565 - hypothetical protein, at 975,510 to 975,821
_05565
JDDGAC_05570: JDDGAC_05570 - hypothetical protein, at 975,836 to 976,186
_05570
JDDGAC_05575: JDDGAC_05575 - hypothetical protein, at 976,202 to 976,534
_05575
JDDGAC_05580: JDDGAC_05580 - hypothetical protein, at 976,527 to 976,724
_05580
JDDGAC_05585: JDDGAC_05585 - hypothetical protein, at 976,714 to 977,010
_05585
JDDGAC_05590: gp16 - Bacteriophage Mu, GemA protein, at 977,007 to 977,516
gp16
JDDGAC_05595: mor - transcriptional regulator, at 977,586 to 978,011
mor
Position (kb) 976
977
978 Strain fitness (log2 ratio) -2
-1
0
1
2 at 975.716 kb on + strand, within JDDGAC_05565 at 975.724 kb on - strand, within JDDGAC_05565 at 975.887 kb on - strand, within JDDGAC_05570 at 975.961 kb on + strand, within JDDGAC_05570 at 976.469 kb on - strand, within JDDGAC_05575 at 976.469 kb on - strand, within JDDGAC_05575 at 976.519 kb on + strand at 976.609 kb on + strand, within JDDGAC_05580 at 976.627 kb on - strand, within JDDGAC_05580 at 976.874 kb on + strand, within JDDGAC_05585 at 976.878 kb on + strand, within JDDGAC_05585 at 977.001 kb on + strand at 977.001 kb on + strand at 977.001 kb on + strand at 977.073 kb on + strand, within gp16 at 977.073 kb on + strand, within gp16 at 977.073 kb on + strand, within gp16 at 977.073 kb on + strand, within gp16 at 977.074 kb on - strand, within gp16 at 977.075 kb on + strand, within gp16 at 977.271 kb on - strand, within gp16 at 977.552 kb on - strand at 977.823 kb on + strand, within mor at 977.827 kb on - strand, within mor at 977.827 kb on - strand, within mor at 977.827 kb on - strand, within mor at 977.951 kb on + strand, within mor
Per-strain Table
Position Strand Gene LocusTag Fraction WM_JK32 remove 975,716 + JDDGAC_05565 0.66 -0.0 975,724 - JDDGAC_05565 0.69 +0.1 975,887 - JDDGAC_05570 0.15 -2.3 975,961 + JDDGAC_05570 0.36 +0.2 976,469 - JDDGAC_05575 0.80 -0.7 976,469 - JDDGAC_05575 0.80 +0.5 976,519 + -0.5 976,609 + JDDGAC_05580 0.41 +0.9 976,627 - JDDGAC_05580 0.51 +1.2 976,874 + JDDGAC_05585 0.54 -0.6 976,878 + JDDGAC_05585 0.55 -0.6 977,001 + -0.0 977,001 + +0.1 977,001 + -0.6 977,073 + gp16 JDDGAC_05590 0.13 -0.1 977,073 + gp16 JDDGAC_05590 0.13 -0.7 977,073 + gp16 JDDGAC_05590 0.13 -0.2 977,073 + gp16 JDDGAC_05590 0.13 +1.0 977,074 - gp16 JDDGAC_05590 0.13 +0.1 977,075 + gp16 JDDGAC_05590 0.13 +0.4 977,271 - gp16 JDDGAC_05590 0.52 +2.5 977,552 - +1.7 977,823 + mor JDDGAC_05595 0.56 -1.3 977,827 - mor JDDGAC_05595 0.57 -0.5 977,827 - mor JDDGAC_05595 0.57 -0.0 977,827 - mor JDDGAC_05595 0.57 +2.4 977,951 + mor JDDGAC_05595 0.86 +0.8
Or see this region's nucleotide sequence