Strain Fitness in Escherichia coli ECRC98 around JDDGAC_02510

Experiment: WM_JK32

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntJDDGAC_02490 and JDDGAC_02495 are separated by 115 nucleotidesJDDGAC_02495 and JDDGAC_02500 overlap by 12 nucleotidesJDDGAC_02500 and JDDGAC_02510 are separated by 44 nucleotidesJDDGAC_02510 and JDDGAC_02515 are separated by 447 nucleotides JDDGAC_02490: JDDGAC_02490 - DUF551 domain-containing protein, at 445,848 to 446,432 _02490 JDDGAC_02495: JDDGAC_02495 - hypothetical protein, at 446,548 to 446,652 _02495 JDDGAC_02500: JDDGAC_02500 - hypothetical protein, at 446,641 to 446,796 _02500 JDDGAC_02510: JDDGAC_02510 - protein hokC, at 446,841 to 447,053 _02510 JDDGAC_02515: JDDGAC_02515 - DUF968 domain-containing protein, at 447,501 to 448,550 _02515 Position (kb) 446 447 448Strain fitness (log2 ratio) -2 -1 0 1at 445.897 kb on + strandat 445.898 kb on - strandat 445.966 kb on + strand, within JDDGAC_02490at 446.016 kb on + strand, within JDDGAC_02490at 446.018 kb on + strand, within JDDGAC_02490at 446.088 kb on + strand, within JDDGAC_02490at 446.088 kb on + strand, within JDDGAC_02490at 446.088 kb on + strand, within JDDGAC_02490at 446.098 kb on + strand, within JDDGAC_02490at 446.099 kb on - strand, within JDDGAC_02490at 446.099 kb on - strand, within JDDGAC_02490at 446.101 kb on - strand, within JDDGAC_02490at 446.954 kb on - strand, within JDDGAC_02510at 446.954 kb on - strand, within JDDGAC_02510

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction WM_JK32
remove
445,897 + +0.8
445,898 - +1.2
445,966 + JDDGAC_02490 0.20 -2.7
446,016 + JDDGAC_02490 0.29 +0.7
446,018 + JDDGAC_02490 0.29 +0.3
446,088 + JDDGAC_02490 0.41 -0.0
446,088 + JDDGAC_02490 0.41 -0.1
446,088 + JDDGAC_02490 0.41 -0.7
446,098 + JDDGAC_02490 0.43 +0.2
446,099 - JDDGAC_02490 0.43 -1.4
446,099 - JDDGAC_02490 0.43 +0.8
446,101 - JDDGAC_02490 0.43 -1.0
446,954 - JDDGAC_02510 0.53 +0.1
446,954 - JDDGAC_02510 0.53 +1.3

Or see this region's nucleotide sequence