Strain Fitness in Escherichia coli ECRC98 around JDDGAC_01130

Experiment: WM_JK32

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	WM_JK32
189,688	-	sdaA	JDDGAC_01125	0.42	-1.3
189,857	-	sdaA	JDDGAC_01125	0.54	-0.4
190,064	-	sdaA	JDDGAC_01125	0.70	+0.9
190,232	+	sdaA	JDDGAC_01125	0.82	-0.1
190,233	-	sdaA	JDDGAC_01125	0.82	-0.6
190,263	-	sdaA	JDDGAC_01125	0.84	-0.1
190,353	-				-1.9
190,413	-				+0.4
190,455	-				-4.1
190,484	+				+0.7
190,535	-				+0.2
190,535	-				+0.4
190,647	+				-0.2
190,648	-				+0.5
190,654	-				-0.5
190,657	+				-0.2
190,658	-				-1.8
190,658	-				+1.1
190,729	+	nudL	JDDGAC_01130	0.12	+0.7
190,730	-	nudL	JDDGAC_01130	0.12	-2.2
190,777	+	nudL	JDDGAC_01130	0.20	+0.4
190,777	+	nudL	JDDGAC_01130	0.20	-1.3
190,809	+	nudL	JDDGAC_01130	0.25	+1.1
190,810	-	nudL	JDDGAC_01130	0.26	+0.8
190,810	-	nudL	JDDGAC_01130	0.26	+0.2
190,920	+	nudL	JDDGAC_01130	0.45	-0.0
190,920	+	nudL	JDDGAC_01130	0.45	+0.1
190,972	-	nudL	JDDGAC_01130	0.54	-0.0
190,974	-	nudL	JDDGAC_01130	0.54	-0.1
190,974	-	nudL	JDDGAC_01130	0.54	-0.3
190,974	-	nudL	JDDGAC_01130	0.54	+1.6
191,263	-				+0.0
191,266	-				-0.3
191,271	-				+1.2
191,271	-				-1.7
191,349	+				-0.4
191,350	-				+0.4
191,385	-	pabB	JDDGAC_01135	0.10	+0.6
191,385	-	pabB	JDDGAC_01135	0.10	+0.4
191,394	-	pabB	JDDGAC_01135	0.11	+0.5
191,445	-	pabB	JDDGAC_01135	0.15	+0.5
191,551	-	pabB	JDDGAC_01135	0.23	+0.1
191,649	+	pabB	JDDGAC_01135	0.30	+0.5
191,680	-	pabB	JDDGAC_01135	0.32	+1.2
191,826	-	pabB	JDDGAC_01135	0.43	+0.6
191,871	+	pabB	JDDGAC_01135	0.46	+1.0
191,883	-	pabB	JDDGAC_01135	0.47	-0.8
191,941	+	pabB	JDDGAC_01135	0.51	+1.5
191,998	+	pabB	JDDGAC_01135	0.55	-0.1
191,998	+	pabB	JDDGAC_01135	0.55	+1.1
192,045	-	pabB	JDDGAC_01135	0.59	-0.8
192,134	+	pabB	JDDGAC_01135	0.65	-0.9
192,135	-	pabB	JDDGAC_01135	0.65	+0.5
192,135	-	pabB	JDDGAC_01135	0.65	-0.4
192,156	-	pabB	JDDGAC_01135	0.67	-0.9
192,191	-	pabB	JDDGAC_01135	0.70	+1.4
192,191	-	pabB	JDDGAC_01135	0.70	+0.7
192,191	-	pabB	JDDGAC_01135	0.70	-0.9
192,194	+	pabB	JDDGAC_01135	0.70	+0.5
192,222	-	pabB	JDDGAC_01135	0.72	+0.7
192,222	-	pabB	JDDGAC_01135	0.72	+0.6