Experiment: WM_K30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rri1 and JDDGAC_29105 overlap by 4 nucleotides JDDGAC_29105 and JDDGAC_29110 are separated by 259 nucleotides JDDGAC_29110 and lomR are separated by 66 nucleotides lomR and JDDGAC_29120 are separated by 64 nucleotides
JDDGAC_29100: rri1 - phage tail protein, at 5,551,010 to 5,551,747
rri1
JDDGAC_29105: JDDGAC_29105 - tail assembly protein, at 5,551,744 to 5,552,325
_29105
JDDGAC_29110: JDDGAC_29110 - host specificity protein J, at 5,552,585 to 5,556,064
_29110
JDDGAC_29115: lomR - Ail/Lom family protein, at 5,556,131 to 5,556,730
lomR
JDDGAC_29120: JDDGAC_29120 - phage tail protein, at 5,556,795 to 5,558,108
_29120
Position (kb) 5552
5553
5554
5555
5556
5557 Strain fitness (log2 ratio) -2
-1
0
1 at 5552.170 kb on + strand, within JDDGAC_29105 at 5552.323 kb on + strand at 5554.794 kb on - strand, within JDDGAC_29110 at 5554.794 kb on - strand, within JDDGAC_29110 at 5555.208 kb on + strand, within JDDGAC_29110 at 5555.233 kb on + strand, within JDDGAC_29110 at 5555.292 kb on - strand, within JDDGAC_29110 at 5556.966 kb on + strand, within JDDGAC_29120 at 5557.027 kb on - strand, within JDDGAC_29120
Per-strain Table
Position Strand Gene LocusTag Fraction WM_K30 remove 5,552,170 + JDDGAC_29105 0.73 +0.3 5,552,323 + -0.0 5,554,794 - JDDGAC_29110 0.63 -1.8 5,554,794 - JDDGAC_29110 0.63 -0.4 5,555,208 + JDDGAC_29110 0.75 -0.6 5,555,233 + JDDGAC_29110 0.76 -1.0 5,555,292 - JDDGAC_29110 0.78 -0.4 5,556,966 + JDDGAC_29120 0.13 +1.1 5,557,027 - JDDGAC_29120 0.18 +0.2
Or see this region's nucleotide sequence