Experiment: WM_K30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yegI and yegD are separated by 12 nucleotides yegD and alkA are separated by 181 nucleotides
JDDGAC_28355: yegI - protein kinase YegI, at 5,432,417 to 5,434,357
yegI
JDDGAC_28360: yegD - molecular chaperone, at 5,434,370 to 5,435,674
yegD
JDDGAC_28365: alkA - DNA-3-methyladenine glycosylase 2, at 5,435,856 to 5,436,704
alkA
Position (kb) 5434
5435
5436 Strain fitness (log2 ratio) -1
0
1 at 5433.416 kb on + strand, within yegI at 5433.568 kb on - strand, within yegI at 5433.588 kb on - strand, within yegI at 5433.660 kb on - strand, within yegI at 5433.660 kb on - strand, within yegI at 5433.664 kb on + strand, within yegI at 5433.758 kb on - strand, within yegI at 5433.776 kb on + strand, within yegI at 5433.776 kb on + strand, within yegI at 5433.827 kb on - strand, within yegI at 5434.000 kb on + strand, within yegI at 5434.512 kb on + strand, within yegD at 5434.513 kb on - strand, within yegD at 5434.517 kb on - strand, within yegD at 5434.517 kb on - strand, within yegD at 5434.724 kb on + strand, within yegD at 5434.784 kb on + strand, within yegD at 5434.841 kb on + strand, within yegD at 5434.841 kb on + strand, within yegD at 5434.842 kb on - strand, within yegD at 5435.108 kb on + strand, within yegD at 5435.109 kb on - strand, within yegD at 5435.122 kb on - strand, within yegD at 5435.436 kb on + strand, within yegD at 5435.436 kb on + strand, within yegD at 5435.437 kb on - strand, within yegD at 5435.489 kb on - strand, within yegD at 5435.504 kb on - strand, within yegD at 5435.699 kb on - strand at 5435.859 kb on + strand at 5435.860 kb on - strand at 5435.958 kb on + strand, within alkA at 5435.967 kb on - strand, within alkA at 5436.016 kb on + strand, within alkA at 5436.017 kb on - strand, within alkA at 5436.026 kb on + strand, within alkA at 5436.043 kb on + strand, within alkA at 5436.309 kb on + strand, within alkA at 5436.310 kb on - strand, within alkA at 5436.310 kb on - strand, within alkA at 5436.311 kb on + strand, within alkA at 5436.371 kb on - strand, within alkA at 5436.374 kb on + strand, within alkA at 5436.375 kb on - strand, within alkA at 5436.375 kb on - strand, within alkA at 5436.519 kb on + strand, within alkA at 5436.570 kb on + strand, within alkA at 5436.570 kb on + strand, within alkA at 5436.651 kb on + strand at 5436.651 kb on + strand at 5436.665 kb on + strand at 5436.665 kb on + strand at 5436.666 kb on - strand at 5436.673 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_K30 remove 5,433,416 + yegI JDDGAC_28355 0.51 +1.4 5,433,568 - yegI JDDGAC_28355 0.59 +0.1 5,433,588 - yegI JDDGAC_28355 0.60 -0.2 5,433,660 - yegI JDDGAC_28355 0.64 +0.1 5,433,660 - yegI JDDGAC_28355 0.64 -0.4 5,433,664 + yegI JDDGAC_28355 0.64 +0.5 5,433,758 - yegI JDDGAC_28355 0.69 +0.9 5,433,776 + yegI JDDGAC_28355 0.70 -0.4 5,433,776 + yegI JDDGAC_28355 0.70 -1.2 5,433,827 - yegI JDDGAC_28355 0.73 -1.4 5,434,000 + yegI JDDGAC_28355 0.82 -0.2 5,434,512 + yegD JDDGAC_28360 0.11 +1.4 5,434,513 - yegD JDDGAC_28360 0.11 +1.0 5,434,517 - yegD JDDGAC_28360 0.11 -0.7 5,434,517 - yegD JDDGAC_28360 0.11 +0.5 5,434,724 + yegD JDDGAC_28360 0.27 -0.8 5,434,784 + yegD JDDGAC_28360 0.32 -0.1 5,434,841 + yegD JDDGAC_28360 0.36 +0.6 5,434,841 + yegD JDDGAC_28360 0.36 -0.9 5,434,842 - yegD JDDGAC_28360 0.36 -1.1 5,435,108 + yegD JDDGAC_28360 0.57 -0.6 5,435,109 - yegD JDDGAC_28360 0.57 -1.4 5,435,122 - yegD JDDGAC_28360 0.58 -0.8 5,435,436 + yegD JDDGAC_28360 0.82 -0.1 5,435,436 + yegD JDDGAC_28360 0.82 +1.2 5,435,437 - yegD JDDGAC_28360 0.82 +0.1 5,435,489 - yegD JDDGAC_28360 0.86 +0.3 5,435,504 - yegD JDDGAC_28360 0.87 -0.1 5,435,699 - +0.0 5,435,859 + +0.0 5,435,860 - -1.6 5,435,958 + alkA JDDGAC_28365 0.12 -0.4 5,435,967 - alkA JDDGAC_28365 0.13 -0.9 5,436,016 + alkA JDDGAC_28365 0.19 +0.7 5,436,017 - alkA JDDGAC_28365 0.19 -0.2 5,436,026 + alkA JDDGAC_28365 0.20 -0.7 5,436,043 + alkA JDDGAC_28365 0.22 -0.1 5,436,309 + alkA JDDGAC_28365 0.53 +1.7 5,436,310 - alkA JDDGAC_28365 0.53 -0.1 5,436,310 - alkA JDDGAC_28365 0.53 -1.0 5,436,311 + alkA JDDGAC_28365 0.54 +0.4 5,436,371 - alkA JDDGAC_28365 0.61 -0.2 5,436,374 + alkA JDDGAC_28365 0.61 +0.7 5,436,375 - alkA JDDGAC_28365 0.61 +0.2 5,436,375 - alkA JDDGAC_28365 0.61 +1.0 5,436,519 + alkA JDDGAC_28365 0.78 +0.2 5,436,570 + alkA JDDGAC_28365 0.84 +0.9 5,436,570 + alkA JDDGAC_28365 0.84 +0.4 5,436,651 + -0.1 5,436,651 + -0.6 5,436,665 + -0.7 5,436,665 + -0.2 5,436,666 - -1.1 5,436,673 - +1.7
Or see this region's nucleotide sequence