Experiment: WM_K30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ccmF and dsbE overlap by 4 nucleotides dsbE and ccmH overlap by 4 nucleotides
JDDGAC_27265: ccmF - cytochrome c-type biogenesis heme lyase CcmF, at 5,232,501 to 5,234,444
ccmF
JDDGAC_27270: dsbE - thiol:disulfide interchange protein DsbE, at 5,234,441 to 5,234,998
dsbE
JDDGAC_27275: ccmH - cytochrome c-type biogenesis thiol:disulfide oxidoreductase CcmH, at 5,234,995 to 5,236,047
ccmH
Position (kb) 5234
5235 Strain fitness (log2 ratio) -2
-1
0
1 at 5233.522 kb on + strand, within ccmF at 5233.649 kb on + strand, within ccmF at 5233.760 kb on + strand, within ccmF at 5233.919 kb on + strand, within ccmF at 5233.919 kb on + strand, within ccmF at 5233.920 kb on - strand, within ccmF at 5234.019 kb on + strand, within ccmF at 5234.019 kb on + strand, within ccmF at 5234.196 kb on + strand, within ccmF at 5234.197 kb on - strand, within ccmF at 5234.199 kb on + strand, within ccmF at 5234.199 kb on + strand, within ccmF at 5234.199 kb on + strand, within ccmF at 5234.199 kb on + strand, within ccmF at 5234.199 kb on + strand, within ccmF at 5234.200 kb on - strand, within ccmF at 5234.317 kb on - strand at 5234.454 kb on + strand at 5234.473 kb on + strand at 5234.705 kb on + strand, within dsbE at 5234.753 kb on + strand, within dsbE at 5235.070 kb on - strand at 5235.070 kb on - strand at 5235.193 kb on + strand, within ccmH at 5235.194 kb on - strand, within ccmH at 5235.239 kb on - strand, within ccmH at 5235.241 kb on - strand, within ccmH at 5235.241 kb on - strand, within ccmH at 5235.241 kb on - strand, within ccmH at 5235.327 kb on + strand, within ccmH at 5235.350 kb on + strand, within ccmH at 5235.350 kb on + strand, within ccmH at 5235.350 kb on + strand, within ccmH at 5235.351 kb on - strand, within ccmH at 5235.352 kb on + strand, within ccmH at 5235.352 kb on + strand, within ccmH at 5235.353 kb on - strand, within ccmH at 5235.353 kb on - strand, within ccmH at 5235.353 kb on - strand, within ccmH at 5235.353 kb on - strand, within ccmH at 5235.421 kb on - strand, within ccmH at 5235.434 kb on - strand, within ccmH at 5235.442 kb on + strand, within ccmH at 5235.487 kb on + strand, within ccmH at 5235.487 kb on + strand, within ccmH at 5235.657 kb on + strand, within ccmH at 5235.657 kb on + strand, within ccmH at 5235.658 kb on - strand, within ccmH at 5235.659 kb on + strand, within ccmH at 5235.659 kb on + strand, within ccmH at 5235.659 kb on + strand, within ccmH at 5235.660 kb on - strand, within ccmH at 5235.727 kb on + strand, within ccmH at 5235.733 kb on - strand, within ccmH at 5235.864 kb on + strand, within ccmH at 5235.864 kb on + strand, within ccmH at 5235.870 kb on + strand, within ccmH at 5235.870 kb on + strand, within ccmH at 5235.871 kb on - strand, within ccmH at 5235.881 kb on + strand, within ccmH at 5235.882 kb on - strand, within ccmH at 5235.889 kb on + strand, within ccmH at 5235.889 kb on + strand, within ccmH at 5235.890 kb on - strand, within ccmH
Per-strain Table
Position Strand Gene LocusTag Fraction WM_K30 remove 5,233,522 + ccmF JDDGAC_27265 0.53 -0.4 5,233,649 + ccmF JDDGAC_27265 0.59 +0.0 5,233,760 + ccmF JDDGAC_27265 0.65 -1.0 5,233,919 + ccmF JDDGAC_27265 0.73 +0.1 5,233,919 + ccmF JDDGAC_27265 0.73 +0.1 5,233,920 - ccmF JDDGAC_27265 0.73 -0.1 5,234,019 + ccmF JDDGAC_27265 0.78 +0.3 5,234,019 + ccmF JDDGAC_27265 0.78 +0.6 5,234,196 + ccmF JDDGAC_27265 0.87 +0.6 5,234,197 - ccmF JDDGAC_27265 0.87 +1.0 5,234,199 + ccmF JDDGAC_27265 0.87 -0.0 5,234,199 + ccmF JDDGAC_27265 0.87 -0.7 5,234,199 + ccmF JDDGAC_27265 0.87 -0.3 5,234,199 + ccmF JDDGAC_27265 0.87 -0.0 5,234,199 + ccmF JDDGAC_27265 0.87 +0.5 5,234,200 - ccmF JDDGAC_27265 0.87 +0.4 5,234,317 - -1.2 5,234,454 + -0.9 5,234,473 + +0.1 5,234,705 + dsbE JDDGAC_27270 0.47 -0.5 5,234,753 + dsbE JDDGAC_27270 0.56 -2.0 5,235,070 - -0.1 5,235,070 - +1.1 5,235,193 + ccmH JDDGAC_27275 0.19 -0.3 5,235,194 - ccmH JDDGAC_27275 0.19 +0.3 5,235,239 - ccmH JDDGAC_27275 0.23 +0.2 5,235,241 - ccmH JDDGAC_27275 0.23 -0.1 5,235,241 - ccmH JDDGAC_27275 0.23 -0.9 5,235,241 - ccmH JDDGAC_27275 0.23 +0.3 5,235,327 + ccmH JDDGAC_27275 0.32 -0.7 5,235,350 + ccmH JDDGAC_27275 0.34 +0.1 5,235,350 + ccmH JDDGAC_27275 0.34 -0.2 5,235,350 + ccmH JDDGAC_27275 0.34 -0.1 5,235,351 - ccmH JDDGAC_27275 0.34 -1.0 5,235,352 + ccmH JDDGAC_27275 0.34 +0.2 5,235,352 + ccmH JDDGAC_27275 0.34 -0.4 5,235,353 - ccmH JDDGAC_27275 0.34 -0.4 5,235,353 - ccmH JDDGAC_27275 0.34 +0.7 5,235,353 - ccmH JDDGAC_27275 0.34 +0.3 5,235,353 - ccmH JDDGAC_27275 0.34 -0.1 5,235,421 - ccmH JDDGAC_27275 0.40 +0.5 5,235,434 - ccmH JDDGAC_27275 0.42 +0.6 5,235,442 + ccmH JDDGAC_27275 0.42 -0.3 5,235,487 + ccmH JDDGAC_27275 0.47 +0.3 5,235,487 + ccmH JDDGAC_27275 0.47 -0.4 5,235,657 + ccmH JDDGAC_27275 0.63 -0.4 5,235,657 + ccmH JDDGAC_27275 0.63 -0.4 5,235,658 - ccmH JDDGAC_27275 0.63 -0.7 5,235,659 + ccmH JDDGAC_27275 0.63 -0.4 5,235,659 + ccmH JDDGAC_27275 0.63 +0.2 5,235,659 + ccmH JDDGAC_27275 0.63 -0.2 5,235,660 - ccmH JDDGAC_27275 0.63 +0.8 5,235,727 + ccmH JDDGAC_27275 0.70 -1.2 5,235,733 - ccmH JDDGAC_27275 0.70 +0.5 5,235,864 + ccmH JDDGAC_27275 0.83 -0.8 5,235,864 + ccmH JDDGAC_27275 0.83 -1.5 5,235,870 + ccmH JDDGAC_27275 0.83 -0.7 5,235,870 + ccmH JDDGAC_27275 0.83 +0.1 5,235,871 - ccmH JDDGAC_27275 0.83 +0.4 5,235,881 + ccmH JDDGAC_27275 0.84 -0.6 5,235,882 - ccmH JDDGAC_27275 0.84 -1.0 5,235,889 + ccmH JDDGAC_27275 0.85 -0.3 5,235,889 + ccmH JDDGAC_27275 0.85 -0.2 5,235,890 - ccmH JDDGAC_27275 0.85 -0.1
Or see this region's nucleotide sequence