Experiment: WM_K30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cvpA and purF are separated by 36 nucleotides purF and ubiX are separated by 94 nucleotides ubiX and argT are separated by 265 nucleotides
JDDGAC_26670: cvpA - colicin V production protein, at 5,105,337 to 5,105,825
cvpA
JDDGAC_26675: purF - amidophosphoribosyltransferase, at 5,105,862 to 5,107,379
purF
JDDGAC_26680: ubiX - flavin prenyltransferase UbiX, at 5,107,474 to 5,108,043
ubiX
JDDGAC_26685: argT - lysine/arginine/ornithine ABC transporter substrate-binding protein ArgT, at 5,108,309 to 5,109,091
argT
Position (kb) 5105
5106
5107
5108 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 5104.939 kb on + strand at 5105.030 kb on + strand at 5105.113 kb on - strand at 5105.336 kb on + strand at 5105.336 kb on + strand at 5105.337 kb on - strand at 5105.352 kb on + strand at 5105.352 kb on + strand at 5105.353 kb on - strand at 5105.469 kb on + strand, within cvpA at 5105.470 kb on - strand, within cvpA at 5105.475 kb on + strand, within cvpA at 5105.475 kb on + strand, within cvpA at 5105.475 kb on + strand, within cvpA at 5105.476 kb on - strand, within cvpA at 5105.587 kb on + strand, within cvpA at 5105.588 kb on - strand, within cvpA at 5105.787 kb on + strand at 5105.788 kb on - strand at 5105.971 kb on + strand at 5105.971 kb on + strand at 5105.971 kb on + strand at 5105.972 kb on - strand at 5105.972 kb on - strand at 5105.972 kb on - strand at 5105.972 kb on - strand at 5105.981 kb on + strand at 5106.026 kb on - strand, within purF at 5106.041 kb on + strand, within purF at 5106.041 kb on + strand, within purF at 5106.134 kb on + strand, within purF at 5106.153 kb on - strand, within purF at 5106.260 kb on + strand, within purF at 5106.396 kb on - strand, within purF at 5106.474 kb on + strand, within purF at 5106.474 kb on + strand, within purF at 5106.475 kb on - strand, within purF at 5106.476 kb on + strand, within purF at 5106.506 kb on + strand, within purF at 5106.555 kb on + strand, within purF at 5106.581 kb on + strand, within purF at 5106.630 kb on + strand, within purF at 5106.631 kb on - strand, within purF at 5106.631 kb on - strand, within purF at 5106.634 kb on + strand, within purF at 5106.634 kb on + strand, within purF at 5106.635 kb on - strand, within purF at 5106.636 kb on + strand, within purF at 5106.636 kb on + strand, within purF at 5106.636 kb on + strand, within purF at 5106.637 kb on - strand, within purF at 5106.637 kb on - strand, within purF at 5106.637 kb on - strand, within purF at 5106.637 kb on - strand, within purF at 5106.807 kb on - strand, within purF at 5106.807 kb on - strand, within purF at 5106.968 kb on + strand, within purF at 5107.077 kb on + strand, within purF at 5107.257 kb on + strand at 5107.306 kb on + strand at 5107.306 kb on + strand at 5107.310 kb on + strand at 5107.310 kb on + strand at 5107.311 kb on - strand at 5107.470 kb on - strand at 5108.150 kb on + strand at 5108.163 kb on - strand at 5108.208 kb on + strand at 5108.270 kb on - strand at 5108.304 kb on + strand at 5108.309 kb on - strand at 5108.348 kb on - strand at 5108.369 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_K30 remove 5,104,939 + +0.6 5,105,030 + -0.1 5,105,113 - -0.6 5,105,336 + -1.6 5,105,336 + -3.6 5,105,337 - -3.5 5,105,352 + -0.6 5,105,352 + -1.4 5,105,353 - -4.0 5,105,469 + cvpA JDDGAC_26670 0.27 -2.1 5,105,470 - cvpA JDDGAC_26670 0.27 -0.7 5,105,475 + cvpA JDDGAC_26670 0.28 -1.0 5,105,475 + cvpA JDDGAC_26670 0.28 -1.4 5,105,475 + cvpA JDDGAC_26670 0.28 -1.1 5,105,476 - cvpA JDDGAC_26670 0.28 -4.6 5,105,587 + cvpA JDDGAC_26670 0.51 -5.4 5,105,588 - cvpA JDDGAC_26670 0.51 -5.2 5,105,787 + -2.4 5,105,788 - -4.7 5,105,971 + -3.0 5,105,971 + -5.3 5,105,971 + -4.2 5,105,972 - -2.3 5,105,972 - -5.4 5,105,972 - -3.7 5,105,972 - -1.6 5,105,981 + -5.1 5,106,026 - purF JDDGAC_26675 0.11 -0.0 5,106,041 + purF JDDGAC_26675 0.12 -4.9 5,106,041 + purF JDDGAC_26675 0.12 -0.7 5,106,134 + purF JDDGAC_26675 0.18 -3.5 5,106,153 - purF JDDGAC_26675 0.19 -4.7 5,106,260 + purF JDDGAC_26675 0.26 -4.6 5,106,396 - purF JDDGAC_26675 0.35 -3.0 5,106,474 + purF JDDGAC_26675 0.40 -5.4 5,106,474 + purF JDDGAC_26675 0.40 -4.4 5,106,475 - purF JDDGAC_26675 0.40 -4.2 5,106,476 + purF JDDGAC_26675 0.40 -4.1 5,106,506 + purF JDDGAC_26675 0.42 -3.2 5,106,555 + purF JDDGAC_26675 0.46 -2.8 5,106,581 + purF JDDGAC_26675 0.47 -4.5 5,106,630 + purF JDDGAC_26675 0.51 -3.8 5,106,631 - purF JDDGAC_26675 0.51 -3.1 5,106,631 - purF JDDGAC_26675 0.51 -2.5 5,106,634 + purF JDDGAC_26675 0.51 -2.4 5,106,634 + purF JDDGAC_26675 0.51 -3.7 5,106,635 - purF JDDGAC_26675 0.51 -3.4 5,106,636 + purF JDDGAC_26675 0.51 -4.3 5,106,636 + purF JDDGAC_26675 0.51 -3.6 5,106,636 + purF JDDGAC_26675 0.51 -0.7 5,106,637 - purF JDDGAC_26675 0.51 -2.8 5,106,637 - purF JDDGAC_26675 0.51 -1.8 5,106,637 - purF JDDGAC_26675 0.51 -5.4 5,106,637 - purF JDDGAC_26675 0.51 -7.0 5,106,807 - purF JDDGAC_26675 0.62 -0.9 5,106,807 - purF JDDGAC_26675 0.62 -4.6 5,106,968 + purF JDDGAC_26675 0.73 -2.6 5,107,077 + purF JDDGAC_26675 0.80 -3.7 5,107,257 + -1.8 5,107,306 + -4.8 5,107,306 + -2.0 5,107,310 + -2.1 5,107,310 + -2.7 5,107,311 - -1.7 5,107,470 - +0.4 5,108,150 + +0.5 5,108,163 - +0.6 5,108,208 + +0.1 5,108,270 - +1.1 5,108,304 + -0.1 5,108,309 - +0.9 5,108,348 - -2.1 5,108,369 + +0.2
Or see this region's nucleotide sequence