Experiment: WM_K30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_25690 and JDDGAC_25695 are separated by 159 nucleotides JDDGAC_25695 and JDDGAC_25700 overlap by 14 nucleotides JDDGAC_25700 and JDDGAC_25705 overlap by 11 nucleotides JDDGAC_25705 and JDDGAC_25710 overlap by 4 nucleotides
JDDGAC_25690: JDDGAC_25690 - acyltransferase, at 4,909,649 to 4,910,665
_25690
JDDGAC_25695: JDDGAC_25695 - Putative phage holin, at 4,910,825 to 4,911,229
_25695
JDDGAC_25700: JDDGAC_25700 - phage holin family protein, at 4,911,216 to 4,911,524
_25700
JDDGAC_25705: JDDGAC_25705 - endolysin, at 4,911,514 to 4,912,143
_25705
JDDGAC_25710: JDDGAC_25710 - DUF2514 domain-containing protein, at 4,912,140 to 4,912,622
_25710
Position (kb) 4910
4911
4912 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4909.856 kb on + strand, within JDDGAC_25690 at 4909.944 kb on + strand, within JDDGAC_25690 at 4910.298 kb on - strand, within JDDGAC_25690 at 4910.389 kb on - strand, within JDDGAC_25690 at 4910.586 kb on - strand at 4910.586 kb on - strand at 4910.587 kb on + strand at 4910.679 kb on - strand at 4910.700 kb on + strand at 4910.824 kb on + strand at 4910.825 kb on - strand at 4910.825 kb on - strand at 4910.889 kb on + strand, within JDDGAC_25695 at 4911.073 kb on + strand, within JDDGAC_25695 at 4911.074 kb on - strand, within JDDGAC_25695 at 4911.248 kb on + strand, within JDDGAC_25700 at 4911.248 kb on + strand, within JDDGAC_25700 at 4911.269 kb on + strand, within JDDGAC_25700 at 4911.269 kb on + strand, within JDDGAC_25700 at 4911.269 kb on + strand, within JDDGAC_25700 at 4911.269 kb on + strand, within JDDGAC_25700 at 4911.269 kb on + strand, within JDDGAC_25700 at 4911.270 kb on - strand, within JDDGAC_25700 at 4911.270 kb on - strand, within JDDGAC_25700 at 4911.272 kb on - strand, within JDDGAC_25700 at 4911.272 kb on - strand, within JDDGAC_25700 at 4911.299 kb on + strand, within JDDGAC_25700 at 4911.339 kb on + strand, within JDDGAC_25700 at 4911.384 kb on + strand, within JDDGAC_25700 at 4911.523 kb on - strand at 4911.547 kb on - strand at 4911.582 kb on + strand, within JDDGAC_25705 at 4911.583 kb on - strand, within JDDGAC_25705 at 4911.583 kb on - strand, within JDDGAC_25705 at 4911.583 kb on - strand, within JDDGAC_25705 at 4911.583 kb on - strand, within JDDGAC_25705 at 4911.585 kb on - strand, within JDDGAC_25705 at 4911.698 kb on - strand, within JDDGAC_25705 at 4911.830 kb on - strand, within JDDGAC_25705 at 4911.874 kb on + strand, within JDDGAC_25705 at 4911.912 kb on + strand, within JDDGAC_25705 at 4911.912 kb on + strand, within JDDGAC_25705 at 4911.916 kb on + strand, within JDDGAC_25705 at 4912.058 kb on + strand, within JDDGAC_25705 at 4912.059 kb on - strand, within JDDGAC_25705 at 4912.125 kb on + strand at 4912.177 kb on + strand at 4912.177 kb on + strand at 4912.177 kb on + strand at 4912.178 kb on - strand at 4912.181 kb on + strand at 4912.182 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_K30 remove 4,909,856 + JDDGAC_25690 0.20 -1.4 4,909,944 + JDDGAC_25690 0.29 +0.3 4,910,298 - JDDGAC_25690 0.64 -2.4 4,910,389 - JDDGAC_25690 0.73 -2.2 4,910,586 - +0.3 4,910,586 - -1.4 4,910,587 + -1.2 4,910,679 - -1.7 4,910,700 + -3.1 4,910,824 + -2.1 4,910,825 - +0.4 4,910,825 - -2.0 4,910,889 + JDDGAC_25695 0.16 -0.2 4,911,073 + JDDGAC_25695 0.61 +0.6 4,911,074 - JDDGAC_25695 0.61 +2.5 4,911,248 + JDDGAC_25700 0.10 +0.5 4,911,248 + JDDGAC_25700 0.10 -0.8 4,911,269 + JDDGAC_25700 0.17 -0.2 4,911,269 + JDDGAC_25700 0.17 +0.2 4,911,269 + JDDGAC_25700 0.17 -0.1 4,911,269 + JDDGAC_25700 0.17 -0.1 4,911,269 + JDDGAC_25700 0.17 -1.5 4,911,270 - JDDGAC_25700 0.17 -1.1 4,911,270 - JDDGAC_25700 0.17 -0.5 4,911,272 - JDDGAC_25700 0.18 -1.1 4,911,272 - JDDGAC_25700 0.18 -0.2 4,911,299 + JDDGAC_25700 0.27 +0.2 4,911,339 + JDDGAC_25700 0.40 +0.2 4,911,384 + JDDGAC_25700 0.54 -0.7 4,911,523 - +0.8 4,911,547 - -0.1 4,911,582 + JDDGAC_25705 0.11 +0.9 4,911,583 - JDDGAC_25705 0.11 +1.0 4,911,583 - JDDGAC_25705 0.11 +0.9 4,911,583 - JDDGAC_25705 0.11 +2.6 4,911,583 - JDDGAC_25705 0.11 +0.2 4,911,585 - JDDGAC_25705 0.11 -1.0 4,911,698 - JDDGAC_25705 0.29 -0.6 4,911,830 - JDDGAC_25705 0.50 +1.3 4,911,874 + JDDGAC_25705 0.57 -0.2 4,911,912 + JDDGAC_25705 0.63 +2.9 4,911,912 + JDDGAC_25705 0.63 +0.0 4,911,916 + JDDGAC_25705 0.64 -0.2 4,912,058 + JDDGAC_25705 0.86 +1.4 4,912,059 - JDDGAC_25705 0.87 +0.4 4,912,125 + -0.7 4,912,177 + -1.4 4,912,177 + -0.7 4,912,177 + -1.1 4,912,178 - -0.8 4,912,181 + -0.3 4,912,182 - -0.2
Or see this region's nucleotide sequence