Strain Fitness in Escherichia coli ECRC98 around JDDGAC_25515

Experiment: WM_K30

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_25505 and JDDGAC_25510 overlap by 4 nucleotidesJDDGAC_25510 and JDDGAC_25515 are separated by 117 nucleotidesJDDGAC_25515 and JDDGAC_25520 are separated by 61 nucleotidesJDDGAC_25520 and JDDGAC_25525 overlap by 4 nucleotidesJDDGAC_25525 and JDDGAC_25530 overlap by 4 nucleotides JDDGAC_25505: JDDGAC_25505 - primosomal protein, at 4,880,328 to 4,881,143 _25505 JDDGAC_25510: JDDGAC_25510 - replication protein, at 4,881,140 to 4,881,925 _25510 JDDGAC_25515: JDDGAC_25515 - DUF1064 domain-containing protein, at 4,882,043 to 4,882,387 _25515 JDDGAC_25520: JDDGAC_25520 - Ead/Ea22-like family protein, at 4,882,449 to 4,883,024 _25520 JDDGAC_25525: JDDGAC_25525 - hypothetical protein, at 4,883,021 to 4,883,245 _25525 JDDGAC_25530: JDDGAC_25530 - Ead/Ea22-like protein, at 4,883,242 to 4,883,940 _25530 Position (kb) 4882 4883Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4881.085 kb on + strandat 4881.162 kb on + strandat 4881.479 kb on - strand, within JDDGAC_25510at 4881.561 kb on - strand, within JDDGAC_25510at 4881.602 kb on - strand, within JDDGAC_25510at 4881.605 kb on + strand, within JDDGAC_25510at 4881.615 kb on + strand, within JDDGAC_25510at 4881.615 kb on + strand, within JDDGAC_25510at 4881.616 kb on - strand, within JDDGAC_25510at 4881.616 kb on - strand, within JDDGAC_25510at 4881.638 kb on + strand, within JDDGAC_25510at 4881.804 kb on - strand, within JDDGAC_25510at 4881.804 kb on - strand, within JDDGAC_25510at 4881.804 kb on - strand, within JDDGAC_25510at 4881.804 kb on - strand, within JDDGAC_25510at 4881.862 kb on - strandat 4881.923 kb on + strandat 4881.924 kb on - strandat 4881.926 kb on + strandat 4882.056 kb on + strandat 4882.133 kb on - strand, within JDDGAC_25515at 4882.202 kb on + strand, within JDDGAC_25515at 4882.457 kb on + strandat 4882.457 kb on + strandat 4882.536 kb on - strand, within JDDGAC_25520at 4882.536 kb on - strand, within JDDGAC_25520at 4882.536 kb on - strand, within JDDGAC_25520at 4882.595 kb on + strand, within JDDGAC_25520at 4882.634 kb on - strand, within JDDGAC_25520at 4882.680 kb on + strand, within JDDGAC_25520at 4882.680 kb on + strand, within JDDGAC_25520at 4882.681 kb on - strand, within JDDGAC_25520at 4882.682 kb on + strand, within JDDGAC_25520at 4882.682 kb on + strand, within JDDGAC_25520at 4882.682 kb on + strand, within JDDGAC_25520at 4882.682 kb on + strand, within JDDGAC_25520at 4882.682 kb on + strand, within JDDGAC_25520at 4882.682 kb on + strand, within JDDGAC_25520at 4882.682 kb on + strand, within JDDGAC_25520at 4882.682 kb on + strand, within JDDGAC_25520at 4882.683 kb on - strand, within JDDGAC_25520at 4882.683 kb on - strand, within JDDGAC_25520at 4882.683 kb on - strand, within JDDGAC_25520at 4882.736 kb on + strand, within JDDGAC_25520at 4882.736 kb on + strand, within JDDGAC_25520at 4882.736 kb on + strand, within JDDGAC_25520at 4882.736 kb on + strand, within JDDGAC_25520at 4882.736 kb on + strand, within JDDGAC_25520at 4882.736 kb on + strand, within JDDGAC_25520at 4882.736 kb on + strand, within JDDGAC_25520at 4882.736 kb on + strand, within JDDGAC_25520at 4882.737 kb on - strand, within JDDGAC_25520at 4882.737 kb on - strand, within JDDGAC_25520at 4882.737 kb on - strand, within JDDGAC_25520at 4882.737 kb on - strand, within JDDGAC_25520at 4882.737 kb on - strand, within JDDGAC_25520at 4882.738 kb on + strand, within JDDGAC_25520at 4882.815 kb on - strand, within JDDGAC_25520at 4882.815 kb on - strand, within JDDGAC_25520at 4882.815 kb on - strand, within JDDGAC_25520at 4882.815 kb on - strand, within JDDGAC_25520at 4882.815 kb on - strand, within JDDGAC_25520at 4882.819 kb on - strand, within JDDGAC_25520at 4882.819 kb on - strand, within JDDGAC_25520at 4882.819 kb on - strand, within JDDGAC_25520at 4882.819 kb on - strand, within JDDGAC_25520at 4882.821 kb on - strand, within JDDGAC_25520at 4882.873 kb on + strand, within JDDGAC_25520at 4882.892 kb on + strand, within JDDGAC_25520at 4882.892 kb on + strand, within JDDGAC_25520at 4882.981 kb on + strandat 4883.041 kb on + strandat 4883.041 kb on + strandat 4883.126 kb on + strand, within JDDGAC_25525at 4883.160 kb on + strand, within JDDGAC_25525at 4883.254 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_K30
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4,881,085 + -0.5
4,881,162 + +0.4
4,881,479 - JDDGAC_25510 0.43 +0.5
4,881,561 - JDDGAC_25510 0.54 +0.7
4,881,602 - JDDGAC_25510 0.59 +0.7
4,881,605 + JDDGAC_25510 0.59 +0.0
4,881,615 + JDDGAC_25510 0.60 -0.2
4,881,615 + JDDGAC_25510 0.60 +0.2
4,881,616 - JDDGAC_25510 0.61 +0.4
4,881,616 - JDDGAC_25510 0.61 +0.8
4,881,638 + JDDGAC_25510 0.63 +0.3
4,881,804 - JDDGAC_25510 0.84 +0.3
4,881,804 - JDDGAC_25510 0.84 -0.0
4,881,804 - JDDGAC_25510 0.84 +0.4
4,881,804 - JDDGAC_25510 0.84 -0.1
4,881,862 - +0.3
4,881,923 + -0.9
4,881,924 - -0.1
4,881,926 + -1.6
4,882,056 + +0.4
4,882,133 - JDDGAC_25515 0.26 +0.1
4,882,202 + JDDGAC_25515 0.46 -1.6
4,882,457 + -0.8
4,882,457 + +0.5
4,882,536 - JDDGAC_25520 0.15 -0.6
4,882,536 - JDDGAC_25520 0.15 +1.2
4,882,536 - JDDGAC_25520 0.15 -0.5
4,882,595 + JDDGAC_25520 0.25 -1.7
4,882,634 - JDDGAC_25520 0.32 +0.4
4,882,680 + JDDGAC_25520 0.40 +0.2
4,882,680 + JDDGAC_25520 0.40 -1.1
4,882,681 - JDDGAC_25520 0.40 -0.6
4,882,682 + JDDGAC_25520 0.40 +1.6
4,882,682 + JDDGAC_25520 0.40 -2.1
4,882,682 + JDDGAC_25520 0.40 +0.8
4,882,682 + JDDGAC_25520 0.40 -0.6
4,882,682 + JDDGAC_25520 0.40 +0.0
4,882,682 + JDDGAC_25520 0.40 +0.4
4,882,682 + JDDGAC_25520 0.40 -0.7
4,882,682 + JDDGAC_25520 0.40 -0.4
4,882,683 - JDDGAC_25520 0.41 +0.3
4,882,683 - JDDGAC_25520 0.41 -0.9
4,882,683 - JDDGAC_25520 0.41 +1.0
4,882,736 + JDDGAC_25520 0.50 -0.5
4,882,736 + JDDGAC_25520 0.50 -0.9
4,882,736 + JDDGAC_25520 0.50 -0.9
4,882,736 + JDDGAC_25520 0.50 -1.2
4,882,736 + JDDGAC_25520 0.50 -0.9
4,882,736 + JDDGAC_25520 0.50 -1.4
4,882,736 + JDDGAC_25520 0.50 -0.1
4,882,736 + JDDGAC_25520 0.50 -0.8
4,882,737 - JDDGAC_25520 0.50 -0.3
4,882,737 - JDDGAC_25520 0.50 -0.4
4,882,737 - JDDGAC_25520 0.50 -0.3
4,882,737 - JDDGAC_25520 0.50 -0.7
4,882,737 - JDDGAC_25520 0.50 -0.0
4,882,738 + JDDGAC_25520 0.50 -0.6
4,882,815 - JDDGAC_25520 0.64 -1.5
4,882,815 - JDDGAC_25520 0.64 -0.6
4,882,815 - JDDGAC_25520 0.64 -0.4
4,882,815 - JDDGAC_25520 0.64 -3.2
4,882,815 - JDDGAC_25520 0.64 +0.1
4,882,819 - JDDGAC_25520 0.64 -0.5
4,882,819 - JDDGAC_25520 0.64 -0.5
4,882,819 - JDDGAC_25520 0.64 +0.1
4,882,819 - JDDGAC_25520 0.64 -0.2
4,882,821 - JDDGAC_25520 0.65 +0.2
4,882,873 + JDDGAC_25520 0.74 -0.4
4,882,892 + JDDGAC_25520 0.77 +1.8
4,882,892 + JDDGAC_25520 0.77 +1.0
4,882,981 + -1.3
4,883,041 + -0.4
4,883,041 + -0.3
4,883,126 + JDDGAC_25525 0.47 -0.4
4,883,160 + JDDGAC_25525 0.62 +0.0
4,883,254 - -1.8

Or see this region's nucleotide sequence