Experiment: WM_K30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tapT and trxC are separated by 68 nucleotides trxC and yfiF are separated by 206 nucleotides yfiF and ung are separated by 47 nucleotides
JDDGAC_24990: tapT - tRNA-uridine aminocarboxypropyltransferase, at 4,779,309 to 4,780,007
tapT
JDDGAC_24995: trxC - thioredoxin TrxC, at 4,780,076 to 4,780,495
trxC
JDDGAC_25000: yfiF - tRNA/rRNA methyltransferase, at 4,780,702 to 4,781,739
yfiF
JDDGAC_25005: ung - uracil-DNA glycosylase, at 4,781,787 to 4,782,476
ung
Position (kb) 4780
4781
4782 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4779.712 kb on - strand, within tapT at 4779.869 kb on + strand, within tapT at 4779.870 kb on - strand, within tapT at 4779.888 kb on + strand, within tapT at 4779.888 kb on + strand, within tapT at 4779.969 kb on - strand at 4779.969 kb on - strand at 4779.981 kb on + strand at 4780.007 kb on + strand at 4780.077 kb on + strand at 4780.078 kb on - strand at 4780.099 kb on + strand at 4780.223 kb on - strand, within trxC at 4780.337 kb on + strand, within trxC at 4780.381 kb on + strand, within trxC at 4780.495 kb on + strand at 4780.495 kb on + strand at 4780.496 kb on - strand at 4780.496 kb on - strand at 4780.499 kb on + strand at 4780.525 kb on - strand at 4780.551 kb on - strand at 4780.553 kb on + strand at 4780.558 kb on + strand at 4780.558 kb on + strand at 4780.562 kb on + strand at 4780.562 kb on + strand at 4780.563 kb on - strand at 4780.606 kb on + strand at 4780.607 kb on - strand at 4780.610 kb on + strand at 4780.610 kb on + strand at 4780.610 kb on + strand at 4780.610 kb on + strand at 4780.611 kb on - strand at 4780.611 kb on - strand at 4780.611 kb on - strand at 4780.616 kb on - strand at 4780.616 kb on - strand at 4780.722 kb on + strand at 4780.747 kb on + strand at 4780.747 kb on + strand at 4780.747 kb on + strand at 4780.748 kb on - strand at 4780.748 kb on - strand at 4780.748 kb on - strand at 4780.748 kb on - strand at 4780.748 kb on - strand at 4780.779 kb on + strand at 4780.780 kb on - strand at 4781.161 kb on + strand, within yfiF at 4781.161 kb on + strand, within yfiF at 4781.171 kb on + strand, within yfiF at 4781.244 kb on + strand, within yfiF at 4781.271 kb on - strand, within yfiF at 4781.328 kb on + strand, within yfiF at 4781.509 kb on + strand, within yfiF at 4781.599 kb on + strand, within yfiF at 4781.809 kb on - strand at 4781.948 kb on + strand, within ung at 4781.948 kb on + strand, within ung at 4781.948 kb on + strand, within ung at 4781.949 kb on - strand, within ung at 4781.949 kb on - strand, within ung at 4781.949 kb on - strand, within ung at 4781.949 kb on - strand, within ung at 4781.949 kb on - strand, within ung at 4781.952 kb on + strand, within ung at 4781.953 kb on - strand, within ung at 4781.953 kb on - strand, within ung at 4782.107 kb on + strand, within ung at 4782.107 kb on + strand, within ung at 4782.108 kb on - strand, within ung at 4782.159 kb on - strand, within ung at 4782.179 kb on + strand, within ung at 4782.197 kb on + strand, within ung at 4782.199 kb on + strand, within ung at 4782.199 kb on + strand, within ung at 4782.199 kb on + strand, within ung at 4782.200 kb on - strand, within ung at 4782.200 kb on - strand, within ung at 4782.203 kb on + strand, within ung at 4782.204 kb on - strand, within ung at 4782.308 kb on + strand, within ung at 4782.309 kb on - strand, within ung at 4782.364 kb on + strand, within ung at 4782.364 kb on + strand, within ung at 4782.365 kb on - strand, within ung at 4782.368 kb on + strand, within ung at 4782.411 kb on - strand at 4782.462 kb on + strand at 4782.512 kb on - strand at 4782.603 kb on + strand at 4782.614 kb on - strand at 4782.666 kb on + strand at 4782.696 kb on + strand at 4782.696 kb on + strand at 4782.696 kb on + strand at 4782.696 kb on + strand at 4782.697 kb on - strand at 4782.697 kb on - strand at 4782.698 kb on + strand at 4782.698 kb on + strand at 4782.698 kb on + strand at 4782.698 kb on + strand at 4782.698 kb on + strand at 4782.698 kb on + strand at 4782.698 kb on + strand at 4782.698 kb on + strand at 4782.698 kb on + strand at 4782.698 kb on + strand at 4782.698 kb on + strand at 4782.698 kb on + strand at 4782.698 kb on + strand at 4782.698 kb on + strand at 4782.698 kb on + strand at 4782.698 kb on + strand at 4782.699 kb on - strand at 4782.699 kb on - strand at 4782.699 kb on - strand at 4782.699 kb on - strand at 4782.699 kb on - strand at 4782.699 kb on - strand at 4782.699 kb on - strand at 4782.699 kb on - strand at 4782.699 kb on - strand at 4782.699 kb on - strand at 4782.699 kb on - strand at 4782.700 kb on + strand at 4782.700 kb on + strand at 4782.700 kb on + strand at 4782.700 kb on + strand at 4782.700 kb on + strand at 4782.700 kb on + strand at 4782.700 kb on + strand at 4782.700 kb on + strand at 4782.701 kb on - strand at 4782.701 kb on - strand at 4782.701 kb on - strand at 4782.702 kb on + strand at 4782.702 kb on + strand at 4782.703 kb on - strand at 4782.703 kb on - strand at 4782.725 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_K30 remove 4,779,712 - tapT JDDGAC_24990 0.58 -0.4 4,779,869 + tapT JDDGAC_24990 0.80 -1.1 4,779,870 - tapT JDDGAC_24990 0.80 +0.0 4,779,888 + tapT JDDGAC_24990 0.83 +0.6 4,779,888 + tapT JDDGAC_24990 0.83 -1.4 4,779,969 - +0.6 4,779,969 - -0.3 4,779,981 + +0.6 4,780,007 + -0.2 4,780,077 + +0.3 4,780,078 - +0.1 4,780,099 + -2.3 4,780,223 - trxC JDDGAC_24995 0.35 +0.2 4,780,337 + trxC JDDGAC_24995 0.62 -1.6 4,780,381 + trxC JDDGAC_24995 0.73 -0.2 4,780,495 + -1.1 4,780,495 + -1.8 4,780,496 - -0.1 4,780,496 - +1.4 4,780,499 + +0.0 4,780,525 - -0.5 4,780,551 - -0.3 4,780,553 + +1.7 4,780,558 + +0.1 4,780,558 + +0.0 4,780,562 + +0.0 4,780,562 + +1.5 4,780,563 - -1.1 4,780,606 + +1.0 4,780,607 - -1.2 4,780,610 + -0.0 4,780,610 + +0.4 4,780,610 + +1.4 4,780,610 + -1.1 4,780,611 - -0.4 4,780,611 - -0.8 4,780,611 - +0.1 4,780,616 - +0.2 4,780,616 - +0.4 4,780,722 + +0.1 4,780,747 + -0.5 4,780,747 + -0.5 4,780,747 + +0.0 4,780,748 - +0.6 4,780,748 - -0.3 4,780,748 - +0.2 4,780,748 - -0.5 4,780,748 - -0.5 4,780,779 + -0.4 4,780,780 - +2.7 4,781,161 + yfiF JDDGAC_25000 0.44 +0.1 4,781,161 + yfiF JDDGAC_25000 0.44 -0.2 4,781,171 + yfiF JDDGAC_25000 0.45 +0.4 4,781,244 + yfiF JDDGAC_25000 0.52 +0.2 4,781,271 - yfiF JDDGAC_25000 0.55 +0.7 4,781,328 + yfiF JDDGAC_25000 0.60 +0.0 4,781,509 + yfiF JDDGAC_25000 0.78 -0.6 4,781,599 + yfiF JDDGAC_25000 0.86 -0.8 4,781,809 - +0.3 4,781,948 + ung JDDGAC_25005 0.23 +1.9 4,781,948 + ung JDDGAC_25005 0.23 -0.7 4,781,948 + ung JDDGAC_25005 0.23 +2.4 4,781,949 - ung JDDGAC_25005 0.23 +0.9 4,781,949 - ung JDDGAC_25005 0.23 -0.2 4,781,949 - ung JDDGAC_25005 0.23 -0.1 4,781,949 - ung JDDGAC_25005 0.23 +0.3 4,781,949 - ung JDDGAC_25005 0.23 -1.4 4,781,952 + ung JDDGAC_25005 0.24 -0.4 4,781,953 - ung JDDGAC_25005 0.24 +0.1 4,781,953 - ung JDDGAC_25005 0.24 -0.9 4,782,107 + ung JDDGAC_25005 0.46 +0.0 4,782,107 + ung JDDGAC_25005 0.46 -1.3 4,782,108 - ung JDDGAC_25005 0.47 -0.1 4,782,159 - ung JDDGAC_25005 0.54 +0.1 4,782,179 + ung JDDGAC_25005 0.57 +0.6 4,782,197 + ung JDDGAC_25005 0.59 +1.0 4,782,199 + ung JDDGAC_25005 0.60 +0.1 4,782,199 + ung JDDGAC_25005 0.60 +1.9 4,782,199 + ung JDDGAC_25005 0.60 +0.4 4,782,200 - ung JDDGAC_25005 0.60 +0.0 4,782,200 - ung JDDGAC_25005 0.60 +0.6 4,782,203 + ung JDDGAC_25005 0.60 +0.5 4,782,204 - ung JDDGAC_25005 0.60 -0.9 4,782,308 + ung JDDGAC_25005 0.76 -0.4 4,782,309 - ung JDDGAC_25005 0.76 +0.3 4,782,364 + ung JDDGAC_25005 0.84 +1.1 4,782,364 + ung JDDGAC_25005 0.84 +0.0 4,782,365 - ung JDDGAC_25005 0.84 +0.1 4,782,368 + ung JDDGAC_25005 0.84 +0.8 4,782,411 - +0.2 4,782,462 + -1.0 4,782,512 - +0.2 4,782,603 + +0.2 4,782,614 - -0.7 4,782,666 + +0.6 4,782,696 + -0.8 4,782,696 + +1.6 4,782,696 + +0.2 4,782,696 + -0.2 4,782,697 - +0.7 4,782,697 - +0.8 4,782,698 + +0.2 4,782,698 + -0.2 4,782,698 + -1.5 4,782,698 + -3.3 4,782,698 + -0.2 4,782,698 + +1.2 4,782,698 + -0.6 4,782,698 + +0.0 4,782,698 + +0.0 4,782,698 + -0.3 4,782,698 + -1.7 4,782,698 + -0.4 4,782,698 + -0.5 4,782,698 + +0.5 4,782,698 + -0.4 4,782,698 + -0.5 4,782,699 - -0.4 4,782,699 - -0.6 4,782,699 - -0.3 4,782,699 - +0.7 4,782,699 - -1.9 4,782,699 - +0.1 4,782,699 - -0.0 4,782,699 - +0.9 4,782,699 - +0.1 4,782,699 - +1.1 4,782,699 - -0.1 4,782,700 + +1.2 4,782,700 + -1.0 4,782,700 + +0.0 4,782,700 + +0.8 4,782,700 + +0.8 4,782,700 + -0.2 4,782,700 + -0.2 4,782,700 + -0.5 4,782,701 - -0.1 4,782,701 - +0.6 4,782,701 - -0.0 4,782,702 + +0.3 4,782,702 + -0.7 4,782,703 - +1.1 4,782,703 - +0.5 4,782,725 - -0.3
Or see this region's nucleotide sequence