Strain Fitness in Escherichia coli ECRC98 around JDDGAC_23565

Experiment: WM_K30

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyqeJ and yqeI overlap by 4 nucleotidesyqeI and JDDGAC_23565 are separated by 120 nucleotidesJDDGAC_23565 and yqeH are separated by 70 nucleotides JDDGAC_23555: yqeJ - Uncharacterized protein YqeJ, at 4,508,252 to 4,508,731 yqeJ JDDGAC_23560: yqeI - Uncharacterized protein YqeI, at 4,508,728 to 4,509,537 yqeI JDDGAC_23565: JDDGAC_23565 - hypothetical protein, at 4,509,658 to 4,509,789 _23565 JDDGAC_23570: yqeH - Uncharacterized protein YqeH, at 4,509,860 to 4,510,492 yqeH Position (kb) 4509 4510Strain fitness (log2 ratio) -2 -1 0 1 2at 4509.068 kb on - strand, within yqeIat 4509.174 kb on + strand, within yqeIat 4509.197 kb on - strand, within yqeIat 4509.200 kb on - strand, within yqeIat 4509.217 kb on - strand, within yqeIat 4509.217 kb on - strand, within yqeIat 4509.274 kb on - strand, within yqeIat 4509.313 kb on + strand, within yqeIat 4509.325 kb on + strand, within yqeIat 4509.337 kb on - strand, within yqeIat 4509.337 kb on - strand, within yqeIat 4509.459 kb on + strandat 4509.471 kb on + strandat 4509.471 kb on + strandat 4509.592 kb on - strandat 4509.765 kb on + strand, within JDDGAC_23565at 4509.801 kb on - strandat 4510.124 kb on - strand, within yqeHat 4510.330 kb on + strand, within yqeHat 4510.330 kb on + strand, within yqeHat 4510.462 kb on + strandat 4510.730 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_K30
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4,509,068 - yqeI JDDGAC_23560 0.42 -0.4
4,509,174 + yqeI JDDGAC_23560 0.55 -0.1
4,509,197 - yqeI JDDGAC_23560 0.58 +0.3
4,509,200 - yqeI JDDGAC_23560 0.58 -0.4
4,509,217 - yqeI JDDGAC_23560 0.60 -0.7
4,509,217 - yqeI JDDGAC_23560 0.60 -2.0
4,509,274 - yqeI JDDGAC_23560 0.67 +0.4
4,509,313 + yqeI JDDGAC_23560 0.72 +0.2
4,509,325 + yqeI JDDGAC_23560 0.74 -0.4
4,509,337 - yqeI JDDGAC_23560 0.75 -0.3
4,509,337 - yqeI JDDGAC_23560 0.75 -0.5
4,509,459 + +0.9
4,509,471 + -1.7
4,509,471 + -0.1
4,509,592 - +0.6
4,509,765 + JDDGAC_23565 0.81 -0.7
4,509,801 - +0.5
4,510,124 - yqeH JDDGAC_23570 0.42 +1.0
4,510,330 + yqeH JDDGAC_23570 0.74 +1.3
4,510,330 + yqeH JDDGAC_23570 0.74 +0.4
4,510,462 + -0.3
4,510,730 - +2.6

Or see this region's nucleotide sequence