Experiment: WM_K30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_23060 and JDDGAC_23065 are separated by 88 nucleotides JDDGAC_23065 and meaB are separated by 23 nucleotides meaB and scpB overlap by 34 nucleotides scpB and meaB are separated by 10 nucleotides
JDDGAC_23060: JDDGAC_23060 - Coenzyme A transferase, at 4,414,217 to 4,415,398
_23060
JDDGAC_23065: JDDGAC_23065 - Putative acetyl-CoA hydrolase/transferase, at 4,415,487 to 4,415,723
_23065
JDDGAC_23070: meaB - methylmalonyl Co-A mutase-associated GTPase MeaB, at 4,415,747 to 4,415,953
meaB
JDDGAC_23075: scpB - methylmalonyl-CoA decarboxylase, at 4,415,920 to 4,416,522
scpB
JDDGAC_23080: meaB - methylmalonyl Co-A mutase-associated GTPase MeaB, at 4,416,533 to 4,417,528
meaB
Position (kb) 4415
4416 Strain fitness (log2 ratio) -2
-1
0
1 at 4414.517 kb on - strand, within JDDGAC_23060 at 4414.517 kb on - strand, within JDDGAC_23060 at 4414.590 kb on - strand, within JDDGAC_23060 at 4414.590 kb on - strand, within JDDGAC_23060 at 4414.615 kb on - strand, within JDDGAC_23060 at 4414.619 kb on - strand, within JDDGAC_23060 at 4414.729 kb on + strand, within JDDGAC_23060 at 4414.738 kb on - strand, within JDDGAC_23060 at 4414.845 kb on + strand, within JDDGAC_23060 at 4414.846 kb on - strand, within JDDGAC_23060 at 4414.846 kb on - strand, within JDDGAC_23060 at 4414.852 kb on + strand, within JDDGAC_23060 at 4415.033 kb on - strand, within JDDGAC_23060 at 4415.098 kb on - strand, within JDDGAC_23060 at 4415.140 kb on + strand, within JDDGAC_23060 at 4415.141 kb on - strand, within JDDGAC_23060 at 4415.141 kb on - strand, within JDDGAC_23060 at 4415.349 kb on + strand at 4415.349 kb on + strand at 4415.349 kb on + strand at 4415.588 kb on + strand, within JDDGAC_23065 at 4415.667 kb on - strand, within JDDGAC_23065 at 4415.667 kb on - strand, within JDDGAC_23065 at 4415.667 kb on - strand, within JDDGAC_23065 at 4415.748 kb on + strand at 4415.846 kb on - strand, within meaB at 4415.846 kb on - strand, within meaB at 4415.888 kb on + strand, within meaB at 4415.958 kb on - strand at 4416.148 kb on - strand, within scpB at 4416.281 kb on + strand, within scpB at 4416.281 kb on + strand, within scpB at 4416.281 kb on + strand, within scpB at 4416.281 kb on + strand, within scpB at 4416.281 kb on + strand, within scpB at 4416.282 kb on - strand, within scpB at 4416.415 kb on - strand, within scpB at 4416.435 kb on + strand, within scpB at 4416.436 kb on - strand, within scpB at 4416.614 kb on + strand at 4416.633 kb on + strand, within meaB at 4416.671 kb on + strand, within meaB at 4416.671 kb on + strand, within meaB
Per-strain Table
Position Strand Gene LocusTag Fraction WM_K30 remove 4,414,517 - JDDGAC_23060 0.25 +0.4 4,414,517 - JDDGAC_23060 0.25 +0.4 4,414,590 - JDDGAC_23060 0.32 -0.1 4,414,590 - JDDGAC_23060 0.32 +0.5 4,414,615 - JDDGAC_23060 0.34 +0.4 4,414,619 - JDDGAC_23060 0.34 +0.5 4,414,729 + JDDGAC_23060 0.43 -0.1 4,414,738 - JDDGAC_23060 0.44 +0.2 4,414,845 + JDDGAC_23060 0.53 +0.3 4,414,846 - JDDGAC_23060 0.53 +0.5 4,414,846 - JDDGAC_23060 0.53 +1.7 4,414,852 + JDDGAC_23060 0.54 +0.1 4,415,033 - JDDGAC_23060 0.69 -0.0 4,415,098 - JDDGAC_23060 0.75 +0.0 4,415,140 + JDDGAC_23060 0.78 -0.6 4,415,141 - JDDGAC_23060 0.78 -0.4 4,415,141 - JDDGAC_23060 0.78 +0.2 4,415,349 + +0.3 4,415,349 + -0.0 4,415,349 + +0.1 4,415,588 + JDDGAC_23065 0.43 -2.4 4,415,667 - JDDGAC_23065 0.76 -1.0 4,415,667 - JDDGAC_23065 0.76 -0.9 4,415,667 - JDDGAC_23065 0.76 +0.2 4,415,748 + +0.4 4,415,846 - meaB JDDGAC_23070 0.48 +0.1 4,415,846 - meaB JDDGAC_23070 0.48 -0.1 4,415,888 + meaB JDDGAC_23070 0.68 -0.7 4,415,958 - +0.0 4,416,148 - scpB JDDGAC_23075 0.38 +0.0 4,416,281 + scpB JDDGAC_23075 0.60 +0.0 4,416,281 + scpB JDDGAC_23075 0.60 +0.3 4,416,281 + scpB JDDGAC_23075 0.60 +1.3 4,416,281 + scpB JDDGAC_23075 0.60 -1.0 4,416,281 + scpB JDDGAC_23075 0.60 -0.3 4,416,282 - scpB JDDGAC_23075 0.60 +0.9 4,416,415 - scpB JDDGAC_23075 0.82 +0.4 4,416,435 + scpB JDDGAC_23075 0.85 -0.3 4,416,436 - scpB JDDGAC_23075 0.86 +0.5 4,416,614 + -0.1 4,416,633 + meaB JDDGAC_23080 0.10 +0.6 4,416,671 + meaB JDDGAC_23080 0.14 -0.1 4,416,671 + meaB JDDGAC_23080 0.14 +0.5
Or see this region's nucleotide sequence