Experiment: WM_K30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt espL2 and JDDGAC_22765 are separated by 787 nucleotides
JDDGAC_22760: espL2 - Type III secretion system secreted effector EspL2, cysteine protease, at 4,354,966 to 4,356,615
espL2
JDDGAC_22765: JDDGAC_22765 - IS4 family transposase, at 4,357,403 to 4,358,293
_22765
Position (kb)
4357
4358
4359 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4356.715 kb on + strand at 4356.716 kb on - strand at 4356.828 kb on + strand at 4356.850 kb on + strand at 4356.850 kb on + strand at 4356.857 kb on - strand at 4356.888 kb on + strand at 4356.948 kb on + strand at 4357.005 kb on + strand at 4357.015 kb on + strand at 4357.016 kb on - strand at 4357.028 kb on + strand at 4357.028 kb on + strand at 4357.029 kb on - strand at 4357.054 kb on - strand at 4357.091 kb on + strand at 4357.092 kb on - strand at 4357.092 kb on - strand at 4357.112 kb on + strand at 4357.112 kb on + strand at 4357.113 kb on - strand at 4357.184 kb on - strand at 4357.187 kb on + strand at 4357.188 kb on - strand at 4357.191 kb on + strand at 4357.226 kb on - strand at 4357.230 kb on - strand at 4357.232 kb on - strand at 4357.319 kb on + strand at 4357.322 kb on - strand at 4357.358 kb on + strand at 4357.358 kb on + strand at 4357.360 kb on + strand at 4357.360 kb on + strand at 4357.360 kb on + strand at 4357.480 kb on + strand at 4357.481 kb on - strand at 4357.485 kb on - strand at 4357.534 kb on + strand, within JDDGAC_22765 at 4357.610 kb on + strand, within JDDGAC_22765 at 4357.610 kb on + strand, within JDDGAC_22765 at 4357.611 kb on - strand, within JDDGAC_22765 at 4357.635 kb on - strand, within JDDGAC_22765 at 4357.635 kb on - strand, within JDDGAC_22765 at 4357.672 kb on + strand, within JDDGAC_22765 at 4357.672 kb on + strand, within JDDGAC_22765 at 4357.673 kb on - strand, within JDDGAC_22765 at 4357.765 kb on + strand, within JDDGAC_22765 at 4357.765 kb on + strand, within JDDGAC_22765 at 4357.765 kb on + strand, within JDDGAC_22765 at 4357.765 kb on + strand, within JDDGAC_22765 at 4357.766 kb on - strand, within JDDGAC_22765 at 4357.766 kb on - strand, within JDDGAC_22765 at 4357.766 kb on - strand, within JDDGAC_22765 at 4357.766 kb on - strand, within JDDGAC_22765 at 4357.766 kb on - strand, within JDDGAC_22765 at 4357.766 kb on - strand, within JDDGAC_22765 at 4357.792 kb on - strand, within JDDGAC_22765 at 4357.819 kb on - strand, within JDDGAC_22765 at 4357.831 kb on + strand, within JDDGAC_22765 at 4357.919 kb on + strand, within JDDGAC_22765 at 4357.919 kb on + strand, within JDDGAC_22765 at 4357.919 kb on + strand, within JDDGAC_22765 at 4357.919 kb on + strand, within JDDGAC_22765 at 4357.920 kb on - strand, within JDDGAC_22765 at 4357.920 kb on - strand, within JDDGAC_22765 at 4357.920 kb on - strand, within JDDGAC_22765 at 4357.920 kb on - strand, within JDDGAC_22765 at 4357.920 kb on - strand, within JDDGAC_22765 at 4358.059 kb on + strand, within JDDGAC_22765 at 4358.059 kb on + strand, within JDDGAC_22765 at 4358.060 kb on - strand, within JDDGAC_22765 at 4358.061 kb on + strand, within JDDGAC_22765 at 4358.062 kb on - strand, within JDDGAC_22765 at 4358.062 kb on - strand, within JDDGAC_22765 at 4358.070 kb on + strand, within JDDGAC_22765 at 4358.071 kb on - strand, within JDDGAC_22765 at 4358.108 kb on + strand, within JDDGAC_22765 at 4358.108 kb on + strand, within JDDGAC_22765 at 4358.109 kb on - strand, within JDDGAC_22765 at 4358.109 kb on - strand, within JDDGAC_22765 at 4358.121 kb on - strand, within JDDGAC_22765 at 4358.121 kb on - strand, within JDDGAC_22765 at 4358.212 kb on + strand at 4358.212 kb on + strand at 4358.220 kb on + strand at 4358.221 kb on - strand at 4358.257 kb on + strand at 4358.289 kb on + strand at 4358.289 kb on + strand at 4358.290 kb on - strand at 4358.342 kb on - strand at 4358.392 kb on + strand at 4358.393 kb on - strand at 4358.469 kb on + strand at 4358.492 kb on + strand at 4358.493 kb on - strand at 4358.695 kb on - strand at 4358.696 kb on + strand at 4358.827 kb on + strand at 4358.827 kb on + strand at 4358.917 kb on + strand at 4359.007 kb on + strand at 4359.061 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_K30 remove 4,356,715 + -0.3 4,356,716 - +0.1 4,356,828 + +0.1 4,356,850 + +0.4 4,356,850 + -0.9 4,356,857 - +0.1 4,356,888 + +0.9 4,356,948 + +0.8 4,357,005 + -1.2 4,357,015 + +0.8 4,357,016 - +0.9 4,357,028 + +0.0 4,357,028 + +0.7 4,357,029 - +0.0 4,357,054 - +0.4 4,357,091 + +0.1 4,357,092 - -1.8 4,357,092 - -0.1 4,357,112 + -0.2 4,357,112 + +0.3 4,357,113 - -0.2 4,357,184 - -0.5 4,357,187 + -0.5 4,357,188 - +0.0 4,357,191 + -0.3 4,357,226 - +0.7 4,357,230 - -1.3 4,357,232 - +0.5 4,357,319 + -0.3 4,357,322 - -1.4 4,357,358 + +0.1 4,357,358 + +1.6 4,357,360 + +0.3 4,357,360 + +0.7 4,357,360 + -0.4 4,357,480 + +0.7 4,357,481 - +1.3 4,357,485 - -0.3 4,357,534 + JDDGAC_22765 0.15 +0.7 4,357,610 + JDDGAC_22765 0.23 +1.2 4,357,610 + JDDGAC_22765 0.23 +0.3 4,357,611 - JDDGAC_22765 0.23 +0.2 4,357,635 - JDDGAC_22765 0.26 -0.3 4,357,635 - JDDGAC_22765 0.26 -0.8 4,357,672 + JDDGAC_22765 0.30 +2.1 4,357,672 + JDDGAC_22765 0.30 +0.2 4,357,673 - JDDGAC_22765 0.30 +1.1 4,357,765 + JDDGAC_22765 0.41 +1.0 4,357,765 + JDDGAC_22765 0.41 +0.6 4,357,765 + JDDGAC_22765 0.41 +0.5 4,357,765 + JDDGAC_22765 0.41 +0.4 4,357,766 - JDDGAC_22765 0.41 +0.2 4,357,766 - JDDGAC_22765 0.41 -1.0 4,357,766 - JDDGAC_22765 0.41 +0.3 4,357,766 - JDDGAC_22765 0.41 -0.6 4,357,766 - JDDGAC_22765 0.41 +0.4 4,357,766 - JDDGAC_22765 0.41 -0.4 4,357,792 - JDDGAC_22765 0.44 +0.7 4,357,819 - JDDGAC_22765 0.47 -0.0 4,357,831 + JDDGAC_22765 0.48 -0.0 4,357,919 + JDDGAC_22765 0.58 +0.6 4,357,919 + JDDGAC_22765 0.58 +0.0 4,357,919 + JDDGAC_22765 0.58 -0.6 4,357,919 + JDDGAC_22765 0.58 -0.4 4,357,920 - JDDGAC_22765 0.58 -2.5 4,357,920 - JDDGAC_22765 0.58 +0.6 4,357,920 - JDDGAC_22765 0.58 +0.1 4,357,920 - JDDGAC_22765 0.58 +0.2 4,357,920 - JDDGAC_22765 0.58 -0.3 4,358,059 + JDDGAC_22765 0.74 +0.8 4,358,059 + JDDGAC_22765 0.74 +0.4 4,358,060 - JDDGAC_22765 0.74 +1.1 4,358,061 + JDDGAC_22765 0.74 -1.6 4,358,062 - JDDGAC_22765 0.74 +0.2 4,358,062 - JDDGAC_22765 0.74 +0.1 4,358,070 + JDDGAC_22765 0.75 +1.0 4,358,071 - JDDGAC_22765 0.75 +0.4 4,358,108 + JDDGAC_22765 0.79 -0.1 4,358,108 + JDDGAC_22765 0.79 +0.2 4,358,109 - JDDGAC_22765 0.79 +2.5 4,358,109 - JDDGAC_22765 0.79 +0.8 4,358,121 - JDDGAC_22765 0.81 +0.1 4,358,121 - JDDGAC_22765 0.81 -2.0 4,358,212 + +0.7 4,358,212 + -0.3 4,358,220 + +0.7 4,358,221 - -1.4 4,358,257 + +0.4 4,358,289 + -0.0 4,358,289 + +0.2 4,358,290 - -0.6 4,358,342 - -1.0 4,358,392 + -1.8 4,358,393 - +0.2 4,358,469 + -0.4 4,358,492 + -0.1 4,358,493 - -0.1 4,358,695 - -0.5 4,358,696 + +0.4 4,358,827 + -0.0 4,358,827 + +0.3 4,358,917 + -1.2 4,359,007 + +0.0 4,359,061 + +0.0
Or see this region's nucleotide sequence