Strain Fitness in Escherichia coli ECRC98 around JDDGAC_22765

Experiment: WM_K30

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntespL2 and JDDGAC_22765 are separated by 787 nucleotides JDDGAC_22760: espL2 - Type III secretion system secreted effector EspL2, cysteine protease, at 4,354,966 to 4,356,615 espL2 JDDGAC_22765: JDDGAC_22765 - IS4 family transposase, at 4,357,403 to 4,358,293 _22765 Position (kb) 4357 4358 4359Strain fitness (log2 ratio) -2 -1 0 1 2at 4356.715 kb on + strandat 4356.716 kb on - strandat 4356.828 kb on + strandat 4356.850 kb on + strandat 4356.850 kb on + strandat 4356.857 kb on - strandat 4356.888 kb on + strandat 4356.948 kb on + strandat 4357.005 kb on + strandat 4357.015 kb on + strandat 4357.016 kb on - strandat 4357.028 kb on + strandat 4357.028 kb on + strandat 4357.029 kb on - strandat 4357.054 kb on - strandat 4357.091 kb on + strandat 4357.092 kb on - strandat 4357.092 kb on - strandat 4357.112 kb on + strandat 4357.112 kb on + strandat 4357.113 kb on - strandat 4357.184 kb on - strandat 4357.187 kb on + strandat 4357.188 kb on - strandat 4357.191 kb on + strandat 4357.226 kb on - strandat 4357.230 kb on - strandat 4357.232 kb on - strandat 4357.319 kb on + strandat 4357.322 kb on - strandat 4357.358 kb on + strandat 4357.358 kb on + strandat 4357.360 kb on + strandat 4357.360 kb on + strandat 4357.360 kb on + strandat 4357.480 kb on + strandat 4357.481 kb on - strandat 4357.485 kb on - strandat 4357.534 kb on + strand, within JDDGAC_22765at 4357.610 kb on + strand, within JDDGAC_22765at 4357.610 kb on + strand, within JDDGAC_22765at 4357.611 kb on - strand, within JDDGAC_22765at 4357.635 kb on - strand, within JDDGAC_22765at 4357.635 kb on - strand, within JDDGAC_22765at 4357.672 kb on + strand, within JDDGAC_22765at 4357.672 kb on + strand, within JDDGAC_22765at 4357.673 kb on - strand, within JDDGAC_22765at 4357.765 kb on + strand, within JDDGAC_22765at 4357.765 kb on + strand, within JDDGAC_22765at 4357.765 kb on + strand, within JDDGAC_22765at 4357.765 kb on + strand, within JDDGAC_22765at 4357.766 kb on - strand, within JDDGAC_22765at 4357.766 kb on - strand, within JDDGAC_22765at 4357.766 kb on - strand, within JDDGAC_22765at 4357.766 kb on - strand, within JDDGAC_22765at 4357.766 kb on - strand, within JDDGAC_22765at 4357.766 kb on - strand, within JDDGAC_22765at 4357.792 kb on - strand, within JDDGAC_22765at 4357.819 kb on - strand, within JDDGAC_22765at 4357.831 kb on + strand, within JDDGAC_22765at 4357.919 kb on + strand, within JDDGAC_22765at 4357.919 kb on + strand, within JDDGAC_22765at 4357.919 kb on + strand, within JDDGAC_22765at 4357.919 kb on + strand, within JDDGAC_22765at 4357.920 kb on - strand, within JDDGAC_22765at 4357.920 kb on - strand, within JDDGAC_22765at 4357.920 kb on - strand, within JDDGAC_22765at 4357.920 kb on - strand, within JDDGAC_22765at 4357.920 kb on - strand, within JDDGAC_22765at 4358.059 kb on + strand, within JDDGAC_22765at 4358.059 kb on + strand, within JDDGAC_22765at 4358.060 kb on - strand, within JDDGAC_22765at 4358.061 kb on + strand, within JDDGAC_22765at 4358.062 kb on - strand, within JDDGAC_22765at 4358.062 kb on - strand, within JDDGAC_22765at 4358.070 kb on + strand, within JDDGAC_22765at 4358.071 kb on - strand, within JDDGAC_22765at 4358.108 kb on + strand, within JDDGAC_22765at 4358.108 kb on + strand, within JDDGAC_22765at 4358.109 kb on - strand, within JDDGAC_22765at 4358.109 kb on - strand, within JDDGAC_22765at 4358.121 kb on - strand, within JDDGAC_22765at 4358.121 kb on - strand, within JDDGAC_22765at 4358.212 kb on + strandat 4358.212 kb on + strandat 4358.220 kb on + strandat 4358.221 kb on - strandat 4358.257 kb on + strandat 4358.289 kb on + strandat 4358.289 kb on + strandat 4358.290 kb on - strandat 4358.342 kb on - strandat 4358.392 kb on + strandat 4358.393 kb on - strandat 4358.469 kb on + strandat 4358.492 kb on + strandat 4358.493 kb on - strandat 4358.695 kb on - strandat 4358.696 kb on + strandat 4358.827 kb on + strandat 4358.827 kb on + strandat 4358.917 kb on + strandat 4359.007 kb on + strandat 4359.061 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_K30
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4,356,715 + -0.3
4,356,716 - +0.1
4,356,828 + +0.1
4,356,850 + +0.4
4,356,850 + -0.9
4,356,857 - +0.1
4,356,888 + +0.9
4,356,948 + +0.8
4,357,005 + -1.2
4,357,015 + +0.8
4,357,016 - +0.9
4,357,028 + +0.0
4,357,028 + +0.7
4,357,029 - +0.0
4,357,054 - +0.4
4,357,091 + +0.1
4,357,092 - -1.8
4,357,092 - -0.1
4,357,112 + -0.2
4,357,112 + +0.3
4,357,113 - -0.2
4,357,184 - -0.5
4,357,187 + -0.5
4,357,188 - +0.0
4,357,191 + -0.3
4,357,226 - +0.7
4,357,230 - -1.3
4,357,232 - +0.5
4,357,319 + -0.3
4,357,322 - -1.4
4,357,358 + +0.1
4,357,358 + +1.6
4,357,360 + +0.3
4,357,360 + +0.7
4,357,360 + -0.4
4,357,480 + +0.7
4,357,481 - +1.3
4,357,485 - -0.3
4,357,534 + JDDGAC_22765 0.15 +0.7
4,357,610 + JDDGAC_22765 0.23 +1.2
4,357,610 + JDDGAC_22765 0.23 +0.3
4,357,611 - JDDGAC_22765 0.23 +0.2
4,357,635 - JDDGAC_22765 0.26 -0.3
4,357,635 - JDDGAC_22765 0.26 -0.8
4,357,672 + JDDGAC_22765 0.30 +2.1
4,357,672 + JDDGAC_22765 0.30 +0.2
4,357,673 - JDDGAC_22765 0.30 +1.1
4,357,765 + JDDGAC_22765 0.41 +1.0
4,357,765 + JDDGAC_22765 0.41 +0.6
4,357,765 + JDDGAC_22765 0.41 +0.5
4,357,765 + JDDGAC_22765 0.41 +0.4
4,357,766 - JDDGAC_22765 0.41 +0.2
4,357,766 - JDDGAC_22765 0.41 -1.0
4,357,766 - JDDGAC_22765 0.41 +0.3
4,357,766 - JDDGAC_22765 0.41 -0.6
4,357,766 - JDDGAC_22765 0.41 +0.4
4,357,766 - JDDGAC_22765 0.41 -0.4
4,357,792 - JDDGAC_22765 0.44 +0.7
4,357,819 - JDDGAC_22765 0.47 -0.0
4,357,831 + JDDGAC_22765 0.48 -0.0
4,357,919 + JDDGAC_22765 0.58 +0.6
4,357,919 + JDDGAC_22765 0.58 +0.0
4,357,919 + JDDGAC_22765 0.58 -0.6
4,357,919 + JDDGAC_22765 0.58 -0.4
4,357,920 - JDDGAC_22765 0.58 -2.5
4,357,920 - JDDGAC_22765 0.58 +0.6
4,357,920 - JDDGAC_22765 0.58 +0.1
4,357,920 - JDDGAC_22765 0.58 +0.2
4,357,920 - JDDGAC_22765 0.58 -0.3
4,358,059 + JDDGAC_22765 0.74 +0.8
4,358,059 + JDDGAC_22765 0.74 +0.4
4,358,060 - JDDGAC_22765 0.74 +1.1
4,358,061 + JDDGAC_22765 0.74 -1.6
4,358,062 - JDDGAC_22765 0.74 +0.2
4,358,062 - JDDGAC_22765 0.74 +0.1
4,358,070 + JDDGAC_22765 0.75 +1.0
4,358,071 - JDDGAC_22765 0.75 +0.4
4,358,108 + JDDGAC_22765 0.79 -0.1
4,358,108 + JDDGAC_22765 0.79 +0.2
4,358,109 - JDDGAC_22765 0.79 +2.5
4,358,109 - JDDGAC_22765 0.79 +0.8
4,358,121 - JDDGAC_22765 0.81 +0.1
4,358,121 - JDDGAC_22765 0.81 -2.0
4,358,212 + +0.7
4,358,212 + -0.3
4,358,220 + +0.7
4,358,221 - -1.4
4,358,257 + +0.4
4,358,289 + -0.0
4,358,289 + +0.2
4,358,290 - -0.6
4,358,342 - -1.0
4,358,392 + -1.8
4,358,393 - +0.2
4,358,469 + -0.4
4,358,492 + -0.1
4,358,493 - -0.1
4,358,695 - -0.5
4,358,696 + +0.4
4,358,827 + -0.0
4,358,827 + +0.3
4,358,917 + -1.2
4,359,007 + +0.0
4,359,061 + +0.0

Or see this region's nucleotide sequence