Strain Fitness in Escherichia coli ECRC98 around JDDGAC_21725

Experiment: WM_K30

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntargG and fMet_trna are separated by 347 nucleotidesfMet_trna and rimP are separated by 206 nucleotidesrimP and nusA are separated by 27 nucleotides JDDGAC_21715: argG - argininosuccinate synthase, at 4,155,605 to 4,156,948 argG JDDGAC_21720: fMet_trna - tRNA-fMet(cat), at 4,157,296 to 4,157,372 _trna JDDGAC_21725: rimP - ribosome maturation factor RimP, at 4,157,579 to 4,158,031 rimP JDDGAC_21730: nusA - Transcription termination/antitermination protein NusA, at 4,158,059 to 4,159,546 nusA Position (kb) 4157 4158 4159Strain fitness (log2 ratio) -3 -2 -1 0 1at 4156.615 kb on + strand, within argGat 4156.792 kb on - strand, within argGat 4156.826 kb on - strandat 4156.827 kb on + strandat 4156.827 kb on + strandat 4156.827 kb on + strandat 4156.828 kb on - strandat 4156.909 kb on + strandat 4156.920 kb on - strandat 4156.953 kb on + strandat 4156.953 kb on + strandat 4156.953 kb on + strandat 4156.954 kb on - strandat 4156.965 kb on + strandat 4156.966 kb on - strandat 4156.966 kb on - strandat 4156.970 kb on - strandat 4157.067 kb on - strandat 4157.085 kb on + strandat 4157.085 kb on + strandat 4157.095 kb on - strandat 4157.198 kb on + strandat 4157.198 kb on + strandat 4157.199 kb on - strandat 4157.250 kb on - strandat 4157.250 kb on - strandat 4157.250 kb on - strandat 4157.250 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_K30
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4,156,615 + argG JDDGAC_21715 0.75 -0.0
4,156,792 - argG JDDGAC_21715 0.88 -0.7
4,156,826 - +0.9
4,156,827 + +0.6
4,156,827 + +0.7
4,156,827 + -0.8
4,156,828 - -0.5
4,156,909 + -0.6
4,156,920 - -0.4
4,156,953 + -2.8
4,156,953 + +0.5
4,156,953 + +0.7
4,156,954 - -0.2
4,156,965 + +0.9
4,156,966 - -1.8
4,156,966 - -0.4
4,156,970 - +0.5
4,157,067 - +1.1
4,157,085 + -0.1
4,157,085 + -0.9
4,157,095 - -0.3
4,157,198 + +1.0
4,157,198 + +0.0
4,157,199 - +0.0
4,157,250 - -0.0
4,157,250 - -0.6
4,157,250 - +0.8
4,157,250 - +1.1

Or see this region's nucleotide sequence