Experiment: WM_K30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt phoU and JDDGAC_18525 are separated by 424 nucleotides JDDGAC_18525 and espY5 are separated by 89 nucleotides
JDDGAC_18520: phoU - phosphate signaling complex protein PhoU, at 3,523,705 to 3,524,430
phoU
JDDGAC_18525: JDDGAC_18525 - hypothetical protein, at 3,524,855 to 3,524,989
_18525
JDDGAC_18530: espY5 - hypothetical protein, at 3,525,079 to 3,527,340
espY5
Position (kb)
3524
3525 Strain fitness (log2 ratio)
-1
0
1 at 3524.428 kb on + strand at 3524.435 kb on - strand at 3524.435 kb on - strand at 3524.487 kb on - strand at 3524.487 kb on - strand at 3524.490 kb on + strand at 3524.490 kb on + strand at 3524.490 kb on + strand at 3524.490 kb on + strand at 3524.490 kb on + strand at 3524.490 kb on + strand at 3524.491 kb on - strand at 3524.491 kb on - strand at 3524.491 kb on - strand at 3524.491 kb on - strand at 3524.491 kb on - strand at 3524.491 kb on - strand at 3524.575 kb on + strand at 3524.590 kb on - strand at 3524.702 kb on + strand at 3524.860 kb on + strand at 3524.861 kb on - strand at 3524.872 kb on + strand, within JDDGAC_18525 at 3524.873 kb on - strand, within JDDGAC_18525 at 3524.897 kb on - strand, within JDDGAC_18525 at 3525.002 kb on + strand at 3525.014 kb on + strand at 3525.015 kb on - strand at 3525.082 kb on + strand at 3525.090 kb on + strand at 3525.241 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_K30 remove 3,524,428 + +0.3 3,524,435 - +0.1 3,524,435 - +0.2 3,524,487 - +0.4 3,524,487 - +0.2 3,524,490 + +0.1 3,524,490 + -0.6 3,524,490 + +0.9 3,524,490 + +0.1 3,524,490 + -0.0 3,524,490 + -1.5 3,524,491 - -0.4 3,524,491 - -0.9 3,524,491 - +0.2 3,524,491 - -0.1 3,524,491 - +0.4 3,524,491 - +0.1 3,524,575 + -0.3 3,524,590 - +0.6 3,524,702 + -0.3 3,524,860 + -0.2 3,524,861 - +0.3 3,524,872 + JDDGAC_18525 0.13 -0.5 3,524,873 - JDDGAC_18525 0.13 -0.3 3,524,897 - JDDGAC_18525 0.31 -1.2 3,525,002 + +0.8 3,525,014 + -0.2 3,525,015 - +0.3 3,525,082 + -0.5 3,525,090 + +0.3 3,525,241 - +0.6
Or see this region's nucleotide sequence