Strain Fitness in Escherichia coli ECRC98 around JDDGAC_16680

Experiment: WM_K30

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	WM_K30
3,143,122	-		JDDGAC_16670	0.89	+0.0
3,143,261	+				+1.0
3,143,391	-				-0.1
3,143,411	-				+1.1
3,143,433	+				-0.5
3,143,434	-				+0.3
3,143,501	+				-0.6
3,143,506	+				+0.5
3,143,506	+				+0.6
3,143,506	+				-0.8
3,143,507	-				-0.6
3,143,566	+				+0.4
3,143,600	+	zur	JDDGAC_16675	0.11	+0.7
3,143,663	+	zur	JDDGAC_16675	0.24	-0.6
3,143,674	-	zur	JDDGAC_16675	0.26	+0.6
3,143,674	-	zur	JDDGAC_16675	0.26	-1.0
3,143,731	-	zur	JDDGAC_16675	0.37	-0.7
3,143,772	-	zur	JDDGAC_16675	0.45	+0.1
3,143,772	-	zur	JDDGAC_16675	0.45	+0.7
3,143,793	+	zur	JDDGAC_16675	0.49	-0.7
3,143,793	+	zur	JDDGAC_16675	0.49	+0.1
3,143,793	+	zur	JDDGAC_16675	0.49	-0.2
3,143,794	-	zur	JDDGAC_16675	0.49	-1.4
3,143,829	-	zur	JDDGAC_16675	0.56	-1.1
3,143,829	-	zur	JDDGAC_16675	0.56	-0.2
3,143,837	+	zur	JDDGAC_16675	0.57	+0.4
3,143,837	+	zur	JDDGAC_16675	0.57	-0.1
3,143,838	-	zur	JDDGAC_16675	0.58	-1.6
3,143,838	-	zur	JDDGAC_16675	0.58	-0.5
3,143,838	-	zur	JDDGAC_16675	0.58	-0.2
3,143,843	+	zur	JDDGAC_16675	0.59	-0.8
3,143,844	-	zur	JDDGAC_16675	0.59	-0.0
3,143,844	-	zur	JDDGAC_16675	0.59	+1.3
3,143,844	-	zur	JDDGAC_16675	0.59	-1.8
3,143,907	-	zur	JDDGAC_16675	0.71	-0.8
3,143,942	+	zur	JDDGAC_16675	0.78	-0.0
3,143,943	-	zur	JDDGAC_16675	0.78	-0.3
3,143,943	-	zur	JDDGAC_16675	0.78	-1.5
3,144,064	+				-0.2
3,144,064	+				+0.3
3,144,064	+				+0.5
3,144,065	-				-1.7
3,144,065	-				-0.1
3,144,074	+				+0.4
3,144,075	-				+0.1
3,144,075	-				+0.3
3,144,095	+				+1.6
3,144,096	-				+0.9
3,144,096	-				-1.7
3,144,185	-	yjbJ	JDDGAC_16680	0.41	-0.8
3,144,205	+	yjbJ	JDDGAC_16680	0.51	-0.7
3,144,262	+	yjbJ	JDDGAC_16680	0.78	-2.8
3,144,263	-	yjbJ	JDDGAC_16680	0.79	+0.4
3,144,268	+	yjbJ	JDDGAC_16680	0.81	-0.8
3,144,283	+	yjbJ	JDDGAC_16680	0.88	-0.8
3,144,301	+				-1.0
3,144,307	+				+0.4
3,144,308	-				-0.4
3,144,308	-				+0.9
3,144,325	+				+0.7
3,144,326	-				-0.2
3,144,342	+				+0.1
3,144,343	-				+0.1
3,144,371	+				+0.3
3,144,371	+				-0.2
3,144,371	+				+0.3
3,144,372	-				+0.3
3,144,372	-				-0.5
3,144,377	+				-0.2
3,144,400	+				-1.0
3,144,400	+				+1.2
3,144,471	-				-0.4
3,144,471	-				-0.3
3,144,471	-				+0.1
3,144,552	-				-0.3
3,144,597	-	dinF	JDDGAC_16685	0.13	-0.8
3,144,597	-	dinF	JDDGAC_16685	0.13	-0.9
3,144,624	+	dinF	JDDGAC_16685	0.15	-0.4
3,144,626	+	dinF	JDDGAC_16685	0.15	+0.9
3,144,646	+	dinF	JDDGAC_16685	0.17	+0.1
3,144,647	-	dinF	JDDGAC_16685	0.17	-0.4
3,144,686	+	dinF	JDDGAC_16685	0.20	-0.3
3,144,686	+	dinF	JDDGAC_16685	0.20	+0.2
3,144,687	-	dinF	JDDGAC_16685	0.20	+0.8
3,144,692	-	dinF	JDDGAC_16685	0.20	-0.6
3,144,853	+	dinF	JDDGAC_16685	0.32	-0.2
3,144,854	-	dinF	JDDGAC_16685	0.33	+0.7
3,144,921	+	dinF	JDDGAC_16685	0.38	+0.0
3,144,950	+	dinF	JDDGAC_16685	0.40	+0.4
3,144,979	-	dinF	JDDGAC_16685	0.42	-0.0
3,145,037	+	dinF	JDDGAC_16685	0.46	-0.4
3,145,196	+	dinF	JDDGAC_16685	0.58	+0.6
3,145,196	+	dinF	JDDGAC_16685	0.58	-1.0
3,145,197	-	dinF	JDDGAC_16685	0.58	+0.7
3,145,197	-	dinF	JDDGAC_16685	0.58	-0.3
3,145,254	+	dinF	JDDGAC_16685	0.63	+0.3
3,145,293	+	dinF	JDDGAC_16685	0.66	+0.2
3,145,305	+	dinF	JDDGAC_16685	0.67	-0.3
3,145,305	+	dinF	JDDGAC_16685	0.67	+1.0
3,145,305	+	dinF	JDDGAC_16685	0.67	-0.2
3,145,305	+	dinF	JDDGAC_16685	0.67	-1.3
3,145,306	-	dinF	JDDGAC_16685	0.67	-0.5
3,145,306	-	dinF	JDDGAC_16685	0.67	+1.0
3,145,306	-	dinF	JDDGAC_16685	0.67	+0.4
3,145,306	-	dinF	JDDGAC_16685	0.67	+0.9
3,145,306	-	dinF	JDDGAC_16685	0.67	+0.3
3,145,306	-	dinF	JDDGAC_16685	0.67	+0.3