Experiment: WM_K30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt miaB and ybeZ are separated by 113 nucleotides ybeZ and ybeY overlap by 4 nucleotides ybeY and corC are separated by 89 nucleotides
JDDGAC_10870: miaB - tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB, at 1,950,120 to 1,951,544
miaB
JDDGAC_10875: ybeZ - PhoH-like protein, at 1,951,658 to 1,952,737
ybeZ
JDDGAC_10880: ybeY - rRNA maturation RNase YbeY, at 1,952,734 to 1,953,201
ybeY
JDDGAC_10885: corC - CNNM family magnesium/cobalt transport protein CorC, at 1,953,291 to 1,954,169
corC
Position (kb) 1951
1952
1953 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1950.874 kb on - strand, within miaB at 1950.956 kb on + strand, within miaB at 1950.957 kb on - strand, within miaB at 1950.962 kb on + strand, within miaB at 1950.992 kb on + strand, within miaB at 1951.017 kb on - strand, within miaB at 1951.119 kb on + strand, within miaB at 1951.127 kb on + strand, within miaB at 1951.128 kb on - strand, within miaB at 1951.128 kb on - strand, within miaB at 1951.149 kb on - strand, within miaB at 1951.207 kb on - strand, within miaB at 1951.207 kb on - strand, within miaB at 1951.207 kb on - strand, within miaB at 1951.207 kb on - strand, within miaB at 1951.207 kb on - strand, within miaB at 1951.208 kb on + strand, within miaB at 1951.277 kb on + strand, within miaB at 1951.277 kb on + strand, within miaB at 1951.278 kb on - strand, within miaB at 1951.278 kb on - strand, within miaB at 1951.285 kb on + strand, within miaB at 1951.285 kb on + strand, within miaB at 1951.286 kb on - strand, within miaB at 1951.293 kb on - strand, within miaB at 1951.379 kb on + strand, within miaB at 1951.393 kb on + strand, within miaB at 1951.442 kb on + strand at 1951.684 kb on + strand at 1951.684 kb on + strand at 1951.895 kb on + strand, within ybeZ at 1951.895 kb on + strand, within ybeZ at 1952.046 kb on + strand, within ybeZ at 1952.046 kb on + strand, within ybeZ at 1952.144 kb on + strand, within ybeZ at 1952.259 kb on + strand, within ybeZ at 1952.392 kb on + strand, within ybeZ at 1952.410 kb on + strand, within ybeZ at 1952.410 kb on + strand, within ybeZ at 1952.437 kb on + strand, within ybeZ at 1952.530 kb on + strand, within ybeZ at 1952.533 kb on + strand, within ybeZ at 1952.536 kb on + strand, within ybeZ at 1952.547 kb on + strand, within ybeZ at 1953.263 kb on + strand at 1953.449 kb on + strand, within corC
Per-strain Table
Position Strand Gene LocusTag Fraction WM_K30 remove 1,950,874 - miaB JDDGAC_10870 0.53 -1.1 1,950,956 + miaB JDDGAC_10870 0.59 -0.5 1,950,957 - miaB JDDGAC_10870 0.59 -1.1 1,950,962 + miaB JDDGAC_10870 0.59 -1.7 1,950,992 + miaB JDDGAC_10870 0.61 -1.1 1,951,017 - miaB JDDGAC_10870 0.63 -1.2 1,951,119 + miaB JDDGAC_10870 0.70 -0.3 1,951,127 + miaB JDDGAC_10870 0.71 -0.6 1,951,128 - miaB JDDGAC_10870 0.71 -3.0 1,951,128 - miaB JDDGAC_10870 0.71 -1.0 1,951,149 - miaB JDDGAC_10870 0.72 -0.1 1,951,207 - miaB JDDGAC_10870 0.76 -0.2 1,951,207 - miaB JDDGAC_10870 0.76 -0.5 1,951,207 - miaB JDDGAC_10870 0.76 +0.1 1,951,207 - miaB JDDGAC_10870 0.76 -0.6 1,951,207 - miaB JDDGAC_10870 0.76 -0.0 1,951,208 + miaB JDDGAC_10870 0.76 -0.1 1,951,277 + miaB JDDGAC_10870 0.81 +1.5 1,951,277 + miaB JDDGAC_10870 0.81 +0.3 1,951,278 - miaB JDDGAC_10870 0.81 -0.4 1,951,278 - miaB JDDGAC_10870 0.81 -1.3 1,951,285 + miaB JDDGAC_10870 0.82 +0.3 1,951,285 + miaB JDDGAC_10870 0.82 -0.9 1,951,286 - miaB JDDGAC_10870 0.82 -0.1 1,951,293 - miaB JDDGAC_10870 0.82 -0.4 1,951,379 + miaB JDDGAC_10870 0.88 -0.3 1,951,393 + miaB JDDGAC_10870 0.89 -1.1 1,951,442 + -1.3 1,951,684 + +0.3 1,951,684 + +0.4 1,951,895 + ybeZ JDDGAC_10875 0.22 -0.0 1,951,895 + ybeZ JDDGAC_10875 0.22 +0.7 1,952,046 + ybeZ JDDGAC_10875 0.36 +0.5 1,952,046 + ybeZ JDDGAC_10875 0.36 -1.3 1,952,144 + ybeZ JDDGAC_10875 0.45 -0.1 1,952,259 + ybeZ JDDGAC_10875 0.56 +1.6 1,952,392 + ybeZ JDDGAC_10875 0.68 +0.1 1,952,410 + ybeZ JDDGAC_10875 0.70 -0.1 1,952,410 + ybeZ JDDGAC_10875 0.70 -2.0 1,952,437 + ybeZ JDDGAC_10875 0.72 +0.9 1,952,530 + ybeZ JDDGAC_10875 0.81 -0.1 1,952,533 + ybeZ JDDGAC_10875 0.81 -0.3 1,952,536 + ybeZ JDDGAC_10875 0.81 -1.9 1,952,547 + ybeZ JDDGAC_10875 0.82 -0.5 1,953,263 + +0.5 1,953,449 + corC JDDGAC_10885 0.18 +0.3
Or see this region's nucleotide sequence