Strain Fitness in Escherichia coli ECRC98 around JDDGAC_10500

Experiment: WM_K30

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcydB and cydA are separated by 15 nucleotidescydA and JDDGAC_10505 are separated by 805 nucleotides JDDGAC_10495: cydB - cytochrome d ubiquinol oxidase subunit II, at 1,866,657 to 1,867,796 cydB JDDGAC_10500: cydA - cytochrome ubiquinol oxidase subunit I, at 1,867,812 to 1,869,380 cydA JDDGAC_10505: JDDGAC_10505 - hypothetical protein, at 1,870,186 to 1,871,130 _10505 Position (kb) 1867 1868 1869 1870Strain fitness (log2 ratio) -1 0 1at 1869.568 kb on - strandat 1869.672 kb on + strandat 1869.753 kb on - strandat 1869.757 kb on - strandat 1869.821 kb on - strandat 1869.823 kb on + strandat 1869.824 kb on - strandat 1869.890 kb on - strandat 1869.892 kb on + strandat 1869.893 kb on - strandat 1869.903 kb on + strandat 1869.952 kb on + strandat 1870.168 kb on + strandat 1870.168 kb on + strandat 1870.185 kb on + strandat 1870.197 kb on + strandat 1870.240 kb on - strandat 1870.357 kb on + strand, within JDDGAC_10505at 1870.358 kb on - strand, within JDDGAC_10505at 1870.380 kb on + strand, within JDDGAC_10505

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_K30
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1,869,568 - -0.2
1,869,672 + -0.6
1,869,753 - -0.4
1,869,757 - +0.3
1,869,821 - +0.5
1,869,823 + -0.3
1,869,824 - +1.1
1,869,890 - +0.4
1,869,892 + +1.1
1,869,893 - -0.1
1,869,903 + -0.8
1,869,952 + +0.4
1,870,168 + +0.2
1,870,168 + -0.5
1,870,185 + -1.2
1,870,197 + -0.5
1,870,240 - -0.4
1,870,357 + JDDGAC_10505 0.18 -0.3
1,870,358 - JDDGAC_10505 0.18 -0.5
1,870,380 + JDDGAC_10505 0.21 -0.1

Or see this region's nucleotide sequence