Experiment: WM_K30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt agp and JDDGAC_08280 are separated by 290 nucleotides JDDGAC_08280 and JDDGAC_08285 are separated by 109 nucleotides
JDDGAC_08275: agp - bifunctional glucose-1-phosphatase/inositol phosphatase, at 1,448,864 to 1,450,105
agp
JDDGAC_08280: JDDGAC_08280 - YccE, at 1,450,396 to 1,450,644
_08280
JDDGAC_08285: JDDGAC_08285 - YccE, at 1,450,754 to 1,451,653
_08285
Position (kb) 1450
1451 Strain fitness (log2 ratio) -2
-1
0
1 at 1449.462 kb on + strand, within agp at 1449.478 kb on + strand, within agp at 1449.535 kb on + strand, within agp at 1449.537 kb on + strand, within agp at 1449.538 kb on - strand, within agp at 1449.538 kb on - strand, within agp at 1449.565 kb on - strand, within agp at 1449.707 kb on - strand, within agp at 1449.707 kb on - strand, within agp at 1449.758 kb on - strand, within agp at 1449.784 kb on - strand, within agp at 1449.818 kb on + strand, within agp at 1449.818 kb on + strand, within agp at 1449.852 kb on + strand, within agp at 1449.852 kb on + strand, within agp at 1449.852 kb on + strand, within agp at 1449.852 kb on + strand, within agp at 1449.862 kb on + strand, within agp at 1449.864 kb on + strand, within agp at 1449.864 kb on + strand, within agp at 1449.865 kb on - strand, within agp at 1449.865 kb on - strand, within agp at 1449.865 kb on - strand, within agp at 1449.875 kb on + strand, within agp at 1449.928 kb on + strand, within agp at 1449.929 kb on - strand, within agp at 1449.980 kb on + strand, within agp at 1449.980 kb on + strand, within agp at 1449.980 kb on + strand, within agp at 1449.981 kb on - strand at 1449.981 kb on - strand at 1449.981 kb on - strand at 1449.981 kb on - strand at 1449.985 kb on + strand at 1450.341 kb on - strand at 1450.496 kb on + strand, within JDDGAC_08280 at 1450.585 kb on - strand, within JDDGAC_08280 at 1450.601 kb on - strand, within JDDGAC_08280 at 1450.832 kb on + strand at 1450.938 kb on + strand, within JDDGAC_08285 at 1451.345 kb on - strand, within JDDGAC_08285 at 1451.642 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_K30 remove 1,449,462 + agp JDDGAC_08275 0.48 -0.5 1,449,478 + agp JDDGAC_08275 0.49 -0.3 1,449,535 + agp JDDGAC_08275 0.54 -0.7 1,449,537 + agp JDDGAC_08275 0.54 -0.3 1,449,538 - agp JDDGAC_08275 0.54 +0.7 1,449,538 - agp JDDGAC_08275 0.54 +0.5 1,449,565 - agp JDDGAC_08275 0.56 +0.8 1,449,707 - agp JDDGAC_08275 0.68 +0.1 1,449,707 - agp JDDGAC_08275 0.68 -1.1 1,449,758 - agp JDDGAC_08275 0.72 -0.4 1,449,784 - agp JDDGAC_08275 0.74 +0.7 1,449,818 + agp JDDGAC_08275 0.77 -0.7 1,449,818 + agp JDDGAC_08275 0.77 +0.7 1,449,852 + agp JDDGAC_08275 0.80 -0.1 1,449,852 + agp JDDGAC_08275 0.80 -0.3 1,449,852 + agp JDDGAC_08275 0.80 +0.4 1,449,852 + agp JDDGAC_08275 0.80 +0.4 1,449,862 + agp JDDGAC_08275 0.80 +0.1 1,449,864 + agp JDDGAC_08275 0.81 -1.5 1,449,864 + agp JDDGAC_08275 0.81 +0.9 1,449,865 - agp JDDGAC_08275 0.81 +1.0 1,449,865 - agp JDDGAC_08275 0.81 +0.1 1,449,865 - agp JDDGAC_08275 0.81 +0.2 1,449,875 + agp JDDGAC_08275 0.81 +0.9 1,449,928 + agp JDDGAC_08275 0.86 +0.5 1,449,929 - agp JDDGAC_08275 0.86 +0.0 1,449,980 + agp JDDGAC_08275 0.90 +1.5 1,449,980 + agp JDDGAC_08275 0.90 +0.7 1,449,980 + agp JDDGAC_08275 0.90 -1.9 1,449,981 - +0.0 1,449,981 - -0.6 1,449,981 - +0.0 1,449,981 - +0.2 1,449,985 + -0.1 1,450,341 - -1.5 1,450,496 + JDDGAC_08280 0.40 +0.0 1,450,585 - JDDGAC_08280 0.76 -1.1 1,450,601 - JDDGAC_08280 0.82 +0.4 1,450,832 + -0.3 1,450,938 + JDDGAC_08285 0.20 -1.1 1,451,345 - JDDGAC_08285 0.66 +0.2 1,451,642 + -1.2
Or see this region's nucleotide sequence