Strain Fitness in Escherichia coli ECRC98 around JDDGAC_07085

Experiment: WM_K30

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_07070 and JDDGAC_07075 are separated by 177 nucleotidesJDDGAC_07075 and JDDGAC_07080 are separated by 61 nucleotidesJDDGAC_07080 and JDDGAC_07085 overlap by 32 nucleotidesJDDGAC_07085 and potC are separated by 166 nucleotidespotC and potD overlap by 4 nucleotides JDDGAC_07070: JDDGAC_07070 - hypothetical protein, at 1,220,834 to 1,221,349 _07070 JDDGAC_07075: JDDGAC_07075 - 3'-5' exoribonuclease, at 1,221,527 to 1,221,871 _07075 JDDGAC_07080: JDDGAC_07080 - excisionase, at 1,221,933 to 1,222,202 _07080 JDDGAC_07085: JDDGAC_07085 - integrase, at 1,222,171 to 1,223,289 _07085 JDDGAC_07090: potC - spermidine/putrescine ABC transporter permease PotC, at 1,223,456 to 1,224,250 potC JDDGAC_07095: potD - spermidine/putrescine ABC transporter substrate-binding protein PotD, at 1,224,247 to 1,225,293 potD Position (kb) 1222 1223 1224Strain fitness (log2 ratio) -2 -1 0 1at 1221.174 kb on + strand, within JDDGAC_07070at 1221.217 kb on + strand, within JDDGAC_07070at 1221.335 kb on + strandat 1221.485 kb on - strandat 1221.485 kb on - strandat 1221.497 kb on - strandat 1221.900 kb on - strandat 1222.004 kb on + strand, within JDDGAC_07080at 1222.004 kb on + strand, within JDDGAC_07080at 1222.027 kb on + strand, within JDDGAC_07080at 1222.032 kb on + strand, within JDDGAC_07080at 1222.032 kb on + strand, within JDDGAC_07080at 1222.033 kb on - strand, within JDDGAC_07080at 1222.166 kb on - strand, within JDDGAC_07080at 1222.216 kb on + strandat 1222.346 kb on + strand, within JDDGAC_07085at 1222.482 kb on + strand, within JDDGAC_07085at 1222.525 kb on + strand, within JDDGAC_07085at 1222.525 kb on + strand, within JDDGAC_07085at 1222.572 kb on - strand, within JDDGAC_07085at 1222.739 kb on + strand, within JDDGAC_07085at 1222.945 kb on - strand, within JDDGAC_07085at 1222.949 kb on + strand, within JDDGAC_07085at 1223.009 kb on + strand, within JDDGAC_07085at 1223.012 kb on + strand, within JDDGAC_07085at 1223.012 kb on + strand, within JDDGAC_07085at 1223.020 kb on + strand, within JDDGAC_07085at 1223.024 kb on + strand, within JDDGAC_07085at 1223.031 kb on + strand, within JDDGAC_07085at 1223.210 kb on + strandat 1223.211 kb on - strandat 1223.220 kb on + strandat 1223.284 kb on - strandat 1223.284 kb on - strandat 1223.306 kb on + strandat 1223.510 kb on + strandat 1223.594 kb on + strand, within potCat 1223.596 kb on + strand, within potCat 1223.597 kb on - strand, within potCat 1223.625 kb on + strand, within potCat 1223.812 kb on + strand, within potCat 1224.162 kb on + strand, within potCat 1224.162 kb on + strand, within potCat 1224.206 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_K30
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1,221,174 + JDDGAC_07070 0.66 -2.5
1,221,217 + JDDGAC_07070 0.74 +0.0
1,221,335 + -0.6
1,221,485 - +1.4
1,221,485 - +0.1
1,221,497 - -0.5
1,221,900 - -0.1
1,222,004 + JDDGAC_07080 0.26 +0.9
1,222,004 + JDDGAC_07080 0.26 -0.3
1,222,027 + JDDGAC_07080 0.35 -1.8
1,222,032 + JDDGAC_07080 0.37 +0.6
1,222,032 + JDDGAC_07080 0.37 -0.9
1,222,033 - JDDGAC_07080 0.37 +0.3
1,222,166 - JDDGAC_07080 0.86 +0.4
1,222,216 + -0.7
1,222,346 + JDDGAC_07085 0.16 -1.9
1,222,482 + JDDGAC_07085 0.28 -0.4
1,222,525 + JDDGAC_07085 0.32 -0.4
1,222,525 + JDDGAC_07085 0.32 -0.0
1,222,572 - JDDGAC_07085 0.36 -0.2
1,222,739 + JDDGAC_07085 0.51 -0.3
1,222,945 - JDDGAC_07085 0.69 +0.2
1,222,949 + JDDGAC_07085 0.70 +0.7
1,223,009 + JDDGAC_07085 0.75 +0.2
1,223,012 + JDDGAC_07085 0.75 +0.2
1,223,012 + JDDGAC_07085 0.75 -0.9
1,223,020 + JDDGAC_07085 0.76 -0.1
1,223,024 + JDDGAC_07085 0.76 -0.3
1,223,031 + JDDGAC_07085 0.77 +1.4
1,223,210 + -0.3
1,223,211 - +1.7
1,223,220 + -0.3
1,223,284 - -0.8
1,223,284 - -0.0
1,223,306 + +0.1
1,223,510 + +0.7
1,223,594 + potC JDDGAC_07090 0.17 -0.4
1,223,596 + potC JDDGAC_07090 0.18 +0.2
1,223,597 - potC JDDGAC_07090 0.18 -0.6
1,223,625 + potC JDDGAC_07090 0.21 -0.2
1,223,812 + potC JDDGAC_07090 0.45 +0.3
1,224,162 + potC JDDGAC_07090 0.89 +0.6
1,224,162 + potC JDDGAC_07090 0.89 -1.2
1,224,206 - -0.0

Or see this region's nucleotide sequence