Strain Fitness in Escherichia coli ECRC98 around JDDGAC_06670

Experiment: WM_K30

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_06665 and JDDGAC_06670 overlap by 1 nucleotidesJDDGAC_06670 and JDDGAC_06675 are separated by 251 nucleotidesJDDGAC_06675 and JDDGAC_06680 are separated by 126 nucleotidesJDDGAC_06680 and ssb are separated by 10 nucleotides JDDGAC_06665: JDDGAC_06665 - capsid protein, at 1,161,783 to 1,162,838 _06665 JDDGAC_06670: JDDGAC_06670 - hypothetical protein, at 1,162,838 to 1,163,044 _06670 JDDGAC_06675: JDDGAC_06675 - hypothetical protein, at 1,163,296 to 1,163,520 _06675 JDDGAC_06680: JDDGAC_06680 - PerC family transcriptional regulator, at 1,163,647 to 1,163,919 _06680 JDDGAC_06685: ssb - single-stranded DNA-binding protein, at 1,163,930 to 1,164,340 ssb Position (kb) 1162 1163 1164Strain fitness (log2 ratio) -3 -2 -1 0 1at 1161.856 kb on + strandat 1161.971 kb on + strand, within JDDGAC_06665at 1162.043 kb on - strand, within JDDGAC_06665at 1162.082 kb on - strand, within JDDGAC_06665at 1162.082 kb on - strand, within JDDGAC_06665at 1162.082 kb on - strand, within JDDGAC_06665at 1162.082 kb on - strand, within JDDGAC_06665at 1162.160 kb on - strand, within JDDGAC_06665at 1162.160 kb on - strand, within JDDGAC_06665at 1162.201 kb on - strand, within JDDGAC_06665at 1162.267 kb on + strand, within JDDGAC_06665at 1162.267 kb on + strand, within JDDGAC_06665at 1162.371 kb on + strand, within JDDGAC_06665at 1162.372 kb on - strand, within JDDGAC_06665at 1162.496 kb on - strand, within JDDGAC_06665at 1162.499 kb on + strand, within JDDGAC_06665at 1162.499 kb on + strand, within JDDGAC_06665at 1162.500 kb on - strand, within JDDGAC_06665at 1162.775 kb on + strandat 1162.815 kb on - strandat 1162.881 kb on - strand, within JDDGAC_06670at 1162.884 kb on + strand, within JDDGAC_06670at 1162.885 kb on - strand, within JDDGAC_06670at 1162.893 kb on - strand, within JDDGAC_06670at 1163.007 kb on - strand, within JDDGAC_06670at 1163.007 kb on - strand, within JDDGAC_06670at 1163.324 kb on - strand, within JDDGAC_06675at 1163.336 kb on - strand, within JDDGAC_06675at 1163.495 kb on - strand, within JDDGAC_06675at 1163.559 kb on + strandat 1163.560 kb on - strandat 1163.599 kb on + strandat 1163.649 kb on - strandat 1163.649 kb on - strandat 1163.692 kb on + strand, within JDDGAC_06680at 1163.693 kb on - strand, within JDDGAC_06680at 1163.693 kb on - strand, within JDDGAC_06680at 1163.709 kb on - strand, within JDDGAC_06680at 1163.709 kb on - strand, within JDDGAC_06680at 1163.915 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_K30
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1,161,856 + +0.1
1,161,971 + JDDGAC_06665 0.18 +1.0
1,162,043 - JDDGAC_06665 0.25 +1.3
1,162,082 - JDDGAC_06665 0.28 +0.5
1,162,082 - JDDGAC_06665 0.28 +0.4
1,162,082 - JDDGAC_06665 0.28 -0.6
1,162,082 - JDDGAC_06665 0.28 +0.4
1,162,160 - JDDGAC_06665 0.36 -1.0
1,162,160 - JDDGAC_06665 0.36 +0.5
1,162,201 - JDDGAC_06665 0.40 -3.4
1,162,267 + JDDGAC_06665 0.46 -0.7
1,162,267 + JDDGAC_06665 0.46 +0.7
1,162,371 + JDDGAC_06665 0.56 +0.4
1,162,372 - JDDGAC_06665 0.56 -0.3
1,162,496 - JDDGAC_06665 0.68 +0.0
1,162,499 + JDDGAC_06665 0.68 -1.1
1,162,499 + JDDGAC_06665 0.68 +0.7
1,162,500 - JDDGAC_06665 0.68 +0.7
1,162,775 + +0.5
1,162,815 - +0.2
1,162,881 - JDDGAC_06670 0.21 -0.2
1,162,884 + JDDGAC_06670 0.22 -1.8
1,162,885 - JDDGAC_06670 0.23 -1.8
1,162,893 - JDDGAC_06670 0.27 +0.8
1,163,007 - JDDGAC_06670 0.82 -1.9
1,163,007 - JDDGAC_06670 0.82 -0.6
1,163,324 - JDDGAC_06675 0.12 +0.2
1,163,336 - JDDGAC_06675 0.18 +0.6
1,163,495 - JDDGAC_06675 0.88 -0.6
1,163,559 + -1.2
1,163,560 - -0.8
1,163,599 + -0.6
1,163,649 - +1.4
1,163,649 - -0.1
1,163,692 + JDDGAC_06680 0.16 -0.2
1,163,693 - JDDGAC_06680 0.17 -1.9
1,163,693 - JDDGAC_06680 0.17 -0.5
1,163,709 - JDDGAC_06680 0.23 -1.5
1,163,709 - JDDGAC_06680 0.23 -0.5
1,163,915 - +0.0

Or see this region's nucleotide sequence