Experiment: WM_K30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_06665 and JDDGAC_06670 overlap by 1 nucleotides JDDGAC_06670 and JDDGAC_06675 are separated by 251 nucleotides JDDGAC_06675 and JDDGAC_06680 are separated by 126 nucleotides JDDGAC_06680 and ssb are separated by 10 nucleotides
JDDGAC_06665: JDDGAC_06665 - capsid protein, at 1,161,783 to 1,162,838
_06665
JDDGAC_06670: JDDGAC_06670 - hypothetical protein, at 1,162,838 to 1,163,044
_06670
JDDGAC_06675: JDDGAC_06675 - hypothetical protein, at 1,163,296 to 1,163,520
_06675
JDDGAC_06680: JDDGAC_06680 - PerC family transcriptional regulator, at 1,163,647 to 1,163,919
_06680
JDDGAC_06685: ssb - single-stranded DNA-binding protein, at 1,163,930 to 1,164,340
ssb
Position (kb)
1162
1163
1164 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1161.856 kb on + strand at 1161.971 kb on + strand, within JDDGAC_06665 at 1162.043 kb on - strand, within JDDGAC_06665 at 1162.082 kb on - strand, within JDDGAC_06665 at 1162.082 kb on - strand, within JDDGAC_06665 at 1162.082 kb on - strand, within JDDGAC_06665 at 1162.082 kb on - strand, within JDDGAC_06665 at 1162.160 kb on - strand, within JDDGAC_06665 at 1162.160 kb on - strand, within JDDGAC_06665 at 1162.201 kb on - strand, within JDDGAC_06665 at 1162.267 kb on + strand, within JDDGAC_06665 at 1162.267 kb on + strand, within JDDGAC_06665 at 1162.371 kb on + strand, within JDDGAC_06665 at 1162.372 kb on - strand, within JDDGAC_06665 at 1162.496 kb on - strand, within JDDGAC_06665 at 1162.499 kb on + strand, within JDDGAC_06665 at 1162.499 kb on + strand, within JDDGAC_06665 at 1162.500 kb on - strand, within JDDGAC_06665 at 1162.775 kb on + strand at 1162.815 kb on - strand at 1162.881 kb on - strand, within JDDGAC_06670 at 1162.884 kb on + strand, within JDDGAC_06670 at 1162.885 kb on - strand, within JDDGAC_06670 at 1162.893 kb on - strand, within JDDGAC_06670 at 1163.007 kb on - strand, within JDDGAC_06670 at 1163.007 kb on - strand, within JDDGAC_06670 at 1163.324 kb on - strand, within JDDGAC_06675 at 1163.336 kb on - strand, within JDDGAC_06675 at 1163.495 kb on - strand, within JDDGAC_06675 at 1163.559 kb on + strand at 1163.560 kb on - strand at 1163.599 kb on + strand at 1163.649 kb on - strand at 1163.649 kb on - strand at 1163.692 kb on + strand, within JDDGAC_06680 at 1163.693 kb on - strand, within JDDGAC_06680 at 1163.693 kb on - strand, within JDDGAC_06680 at 1163.709 kb on - strand, within JDDGAC_06680 at 1163.709 kb on - strand, within JDDGAC_06680 at 1163.915 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_K30 remove 1,161,856 + +0.1 1,161,971 + JDDGAC_06665 0.18 +1.0 1,162,043 - JDDGAC_06665 0.25 +1.3 1,162,082 - JDDGAC_06665 0.28 +0.5 1,162,082 - JDDGAC_06665 0.28 +0.4 1,162,082 - JDDGAC_06665 0.28 -0.6 1,162,082 - JDDGAC_06665 0.28 +0.4 1,162,160 - JDDGAC_06665 0.36 -1.0 1,162,160 - JDDGAC_06665 0.36 +0.5 1,162,201 - JDDGAC_06665 0.40 -3.4 1,162,267 + JDDGAC_06665 0.46 -0.7 1,162,267 + JDDGAC_06665 0.46 +0.7 1,162,371 + JDDGAC_06665 0.56 +0.4 1,162,372 - JDDGAC_06665 0.56 -0.3 1,162,496 - JDDGAC_06665 0.68 +0.0 1,162,499 + JDDGAC_06665 0.68 -1.1 1,162,499 + JDDGAC_06665 0.68 +0.7 1,162,500 - JDDGAC_06665 0.68 +0.7 1,162,775 + +0.5 1,162,815 - +0.2 1,162,881 - JDDGAC_06670 0.21 -0.2 1,162,884 + JDDGAC_06670 0.22 -1.8 1,162,885 - JDDGAC_06670 0.23 -1.8 1,162,893 - JDDGAC_06670 0.27 +0.8 1,163,007 - JDDGAC_06670 0.82 -1.9 1,163,007 - JDDGAC_06670 0.82 -0.6 1,163,324 - JDDGAC_06675 0.12 +0.2 1,163,336 - JDDGAC_06675 0.18 +0.6 1,163,495 - JDDGAC_06675 0.88 -0.6 1,163,559 + -1.2 1,163,560 - -0.8 1,163,599 + -0.6 1,163,649 - +1.4 1,163,649 - -0.1 1,163,692 + JDDGAC_06680 0.16 -0.2 1,163,693 - JDDGAC_06680 0.17 -1.9 1,163,693 - JDDGAC_06680 0.17 -0.5 1,163,709 - JDDGAC_06680 0.23 -1.5 1,163,709 - JDDGAC_06680 0.23 -0.5 1,163,915 - +0.0
Or see this region's nucleotide sequence