Strain Fitness in Escherichia coli ECRC98 around JDDGAC_06305

Experiment: WM_K30

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntminC and minD are separated by 23 nucleotidesminD and minE are separated by 3 nucleotidesminE and JDDGAC_06310 are separated by 371 nucleotides JDDGAC_06295: minC - septum site-determining protein MinC, at 1,100,469 to 1,101,164 minC JDDGAC_06300: minD - septum site-determining protein MinD, at 1,101,188 to 1,102,000 minD JDDGAC_06305: minE - cell division topological specificity factor MinE, at 1,102,004 to 1,102,270 minE JDDGAC_06310: JDDGAC_06310 - autotransporter outer membrane beta-barrel domain-containing protein, at 1,102,642 to 1,103,352 _06310 Position (kb) 1102 1103Strain fitness (log2 ratio) -3 -2 -1 0 1at 1101.199 kb on + strandat 1101.208 kb on + strandat 1101.320 kb on - strand, within minDat 1101.610 kb on + strand, within minDat 1101.652 kb on + strand, within minDat 1102.003 kb on + strandat 1102.138 kb on + strand, within minEat 1102.389 kb on - strandat 1102.407 kb on - strandat 1102.407 kb on - strandat 1102.705 kb on - strandat 1102.937 kb on - strand, within JDDGAC_06310at 1102.939 kb on - strand, within JDDGAC_06310at 1102.939 kb on - strand, within JDDGAC_06310

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_K30
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1,101,199 + -0.5
1,101,208 + +0.6
1,101,320 - minD JDDGAC_06300 0.16 -0.2
1,101,610 + minD JDDGAC_06300 0.52 -1.8
1,101,652 + minD JDDGAC_06300 0.57 -0.4
1,102,003 + -0.2
1,102,138 + minE JDDGAC_06305 0.50 -1.1
1,102,389 - -0.1
1,102,407 - -0.8
1,102,407 - -3.0
1,102,705 - +0.4
1,102,937 - JDDGAC_06310 0.41 -0.0
1,102,939 - JDDGAC_06310 0.42 +0.3
1,102,939 - JDDGAC_06310 0.42 -0.5

Or see this region's nucleotide sequence