Experiment: WM_K30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_05705 and JDDGAC_05710 overlap by 17 nucleotides JDDGAC_05710 and gp45 overlap by 11 nucleotides gp45 and gp46 overlap by 8 nucleotides
JDDGAC_05705: JDDGAC_05705 - Mu-like prophage DNA circulation protein, at 994,289 to 995,638
_05705
JDDGAC_05710: JDDGAC_05710 - phage tail protein, at 995,622 to 996,746
_05710
JDDGAC_05715: gp45 - phage baseplate assembly protein V, at 996,736 to 997,350
gp45
JDDGAC_05720: gp46 - Phage GP46 family protein, at 997,343 to 997,780
gp46
Position (kb) 995
996
997 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 994.628 kb on - strand, within JDDGAC_05705 at 994.848 kb on + strand, within JDDGAC_05705 at 994.855 kb on + strand, within JDDGAC_05705 at 995.082 kb on + strand, within JDDGAC_05705 at 995.097 kb on - strand, within JDDGAC_05705 at 995.479 kb on - strand, within JDDGAC_05705 at 995.487 kb on + strand, within JDDGAC_05705 at 995.487 kb on + strand, within JDDGAC_05705 at 995.487 kb on + strand, within JDDGAC_05705 at 995.487 kb on + strand, within JDDGAC_05705 at 995.492 kb on - strand, within JDDGAC_05705 at 995.643 kb on + strand at 995.644 kb on - strand at 996.007 kb on + strand, within JDDGAC_05710 at 996.007 kb on + strand, within JDDGAC_05710 at 996.120 kb on - strand, within JDDGAC_05710 at 996.638 kb on + strand at 996.638 kb on + strand at 996.639 kb on - strand at 996.728 kb on + strand at 997.039 kb on - strand, within gp45 at 997.049 kb on - strand, within gp45 at 997.069 kb on - strand, within gp45 at 997.070 kb on + strand, within gp45 at 997.070 kb on + strand, within gp45 at 997.071 kb on - strand, within gp45 at 997.149 kb on + strand, within gp45 at 997.173 kb on + strand, within gp45 at 997.174 kb on - strand, within gp45 at 997.285 kb on + strand, within gp45 at 997.441 kb on + strand, within gp46 at 997.668 kb on + strand, within gp46 at 997.668 kb on + strand, within gp46 at 997.669 kb on - strand, within gp46 at 997.669 kb on - strand, within gp46
Per-strain Table
Position Strand Gene LocusTag Fraction WM_K30 remove 994,628 - JDDGAC_05705 0.25 -0.1 994,848 + JDDGAC_05705 0.41 +0.4 994,855 + JDDGAC_05705 0.42 -0.7 995,082 + JDDGAC_05705 0.59 +1.1 995,097 - JDDGAC_05705 0.60 -1.2 995,479 - JDDGAC_05705 0.88 +0.5 995,487 + JDDGAC_05705 0.89 +1.0 995,487 + JDDGAC_05705 0.89 +0.2 995,487 + JDDGAC_05705 0.89 -1.2 995,487 + JDDGAC_05705 0.89 +0.0 995,492 - JDDGAC_05705 0.89 +0.5 995,643 + +0.5 995,644 - +0.6 996,007 + JDDGAC_05710 0.34 +0.2 996,007 + JDDGAC_05710 0.34 -1.8 996,120 - JDDGAC_05710 0.44 -3.1 996,638 + -0.1 996,638 + -0.1 996,639 - +0.5 996,728 + +0.1 997,039 - gp45 JDDGAC_05715 0.49 -1.6 997,049 - gp45 JDDGAC_05715 0.51 +1.0 997,069 - gp45 JDDGAC_05715 0.54 +0.7 997,070 + gp45 JDDGAC_05715 0.54 -2.1 997,070 + gp45 JDDGAC_05715 0.54 -1.6 997,071 - gp45 JDDGAC_05715 0.54 -0.6 997,149 + gp45 JDDGAC_05715 0.67 -1.0 997,173 + gp45 JDDGAC_05715 0.71 -1.9 997,174 - gp45 JDDGAC_05715 0.71 +0.6 997,285 + gp45 JDDGAC_05715 0.89 -0.2 997,441 + gp46 JDDGAC_05720 0.22 +1.2 997,668 + gp46 JDDGAC_05720 0.74 +0.1 997,668 + gp46 JDDGAC_05720 0.74 +0.1 997,669 - gp46 JDDGAC_05720 0.74 -1.3 997,669 - gp46 JDDGAC_05720 0.74 -1.4
Or see this region's nucleotide sequence